JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SVBP_chr1_42802052_42822397	0/0	t0002	608	106	32	9	51	5	9	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0003	608	32	0	6	26	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0004	609	25	3	10	1	4	7	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0005	609	15	1	1	7	0	6	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0006	608	12	5	1	3	0	3	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0007	610	12	12	0	0	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0008	610	10	0	4	0	0	6	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0009	606	10	3	0	5	1	1	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0010	609	9	2	5	2	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0011	609	6	0	4	0	0	2	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0012	607	6	4	0	2	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0013	608	5	3	1	0	0	1	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0014	609	5	0	0	5	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0015	608	3	0	0	3	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0016	608	3	1	0	0	1	1	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0017	609	3	0	0	3	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0018	607	3	0	1	2	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0019	608	2	2	0	0	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0020	607	2	0	1	0	1	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0021	608	1	0	1	0	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0022	608	1	1	0	0	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0023	608	1	0	0	0	0	1	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0024	609	1	1	0	0	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0025	608	1	0	0	1	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVBP_chr1_42802052_42822397	0/0	t0026	609	1	0	0	1	0	0	copy fasta	SVBP	chr1	42802052	42822397
SVEP1_chr9_110360248_110584741	1/1	t0001	1490	143	29	26	57	4	25	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0002	1482	77	2	11	57	1	6	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0003	1490	58	4	15	27	5	7	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0004	1490	51	29	14	0	6	2	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0005	1490	8	8	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0006	1490	7	2	0	5	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0007	1482	3	0	0	3	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0008	1490	3	3	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0009	1490	3	3	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0010	1490	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0011	1490	2	2	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0012	1490	1	0	0	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0013	1490	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0014	1482	1	0	0	1	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0015	1490	1	0	0	0	0	1	copy fasta	SVEP1	chr9	110360248	110584741
SVEP1_chr9_110360248_110584741	0/0	t0016	1490	1	1	0	0	0	0	copy fasta	SVEP1	chr9	110360248	110584741
SVIL_chr10_29452338_29639971	1/0	t0001	1662	130	22	37	43	6	21	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/1	t0002	1664	103	24	23	44	2	9	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	t0003	1660	35	27	3	0	0	5	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	t0004	1661	8	6	0	1	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	t0005	1657	7	3	2	0	0	2	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	t0006	1662	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	t0007	1664	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	t0008	1666	1	0	0	0	0	1	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	t0009	1660	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971