JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SVIL_chr10_29452338_29639971	0/0	t0010	1660	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	t0011	1660	1	1	0	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIL_chr10_29452338_29639971	0/0	t0012	1664	1	0	1	0	0	0	copy fasta	SVIL	chr10	29452338	29639971
SVIP_chr11_22813927_22834801	1/0	t0001	4246	222	42	34	116	3	26	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0002	4246	81	4	23	35	8	11	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/1	t0003	4246	38	5	7	18	3	4	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0004	4246	13	11	1	1	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0005	4250	10	0	1	8	0	1	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0006	4246	10	9	1	0	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0007	4246	7	7	0	0	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0008	4246	6	0	0	6	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0009	4246	6	4	2	0	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0010	4246	3	0	0	3	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0011	4246	3	2	1	0	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0012	4246	2	0	0	0	0	2	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0013	4235	2	2	0	0	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0014	4246	2	0	1	0	1	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0015	4246	2	0	0	2	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0016	4246	2	0	0	0	0	2	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0017	4246	2	0	2	0	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0018	4246	2	0	0	2	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0019	4246	2	2	0	0	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0020	4246	1	0	0	1	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0021	4246	1	0	1	0	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0022	4246	1	0	0	0	1	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0023	4248	1	1	0	0	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0024	4246	1	0	0	0	0	1	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0025	4246	1	1	0	0	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0026	4246	1	0	0	0	0	1	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0027	4246	1	0	0	1	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0028	4246	1	0	0	1	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0029	4246	1	0	0	1	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0030	4246	1	1	0	0	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0031	4246	1	0	0	1	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0032	4246	1	0	0	1	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0033	4246	1	0	0	1	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVIP_chr11_22813927_22834801	0/0	t0034	4246	1	1	0	0	0	0	copy fasta	SVIP	chr11	22813927	22834801
SVOPL_chr7_138589285_138706362	0/1	t0001	545	214	71	36	65	13	28	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	1/0	t0002	545	112	12	13	73	4	9	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	t0003	545	13	2	1	4	1	5	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	t0004	545	7	0	0	7	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	t0005	545	4	0	0	4	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	t0006	545	4	4	0	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	t0007	545	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	t0008	545	1	1	0	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	t0009	545	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	t0010	545	1	1	0	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	t0011	545	1	1	0	0	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOPL_chr7_138589285_138706362	0/0	t0012	545	1	0	0	1	0	0	copy fasta	SVOPL	chr7	138589285	138706362
SVOP_chr12_108902741_109026068	0/0	t0001	4995	52	5	11	25	2	9	copy fasta	SVOP	chr12	108902741	109026068