JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SVOP_chr12_108902741_109026068	0/0	t0002	4995	26	1	1	19	1	4	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0003	4995	25	1	7	17	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0004	4995	11	2	7	0	0	2	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0005	4995	11	0	5	3	0	3	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0006	4995	8	7	1	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0007	4995	7	0	1	6	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0008	4996	7	4	3	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0009	4997	7	6	1	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0010	4995	7	1	6	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0011	4995	6	0	0	6	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0012	4995	5	5	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0013	4996	5	5	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0014	4993	5	5	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0015	4995	5	0	2	1	1	1	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0016	4997	4	4	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0017	4995	4	0	0	4	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0018	4994	3	0	3	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0019	4995	3	0	1	0	0	2	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0020	4995	3	3	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0021	4995	3	0	0	0	1	2	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0022	4995	3	0	0	1	0	2	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0023	4995	3	3	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0024	4995	3	3	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0025	4995	3	2	1	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0026	4995	2	2	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0027	4996	2	0	1	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0028	4995	2	0	0	0	2	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0029	4995	2	2	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0030	4995	2	0	1	0	0	1	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0031	4995	2	2	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0032	4995	2	2	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0033	4996	2	2	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0034	4996	2	0	0	2	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0035	4995	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0036	4994	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0037	4995	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0038	4995	1	0	1	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0039	4996	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0040	4995	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0041	4996	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0042	4995	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0043	4994	1	0	1	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0044	4994	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0045	4995	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0046	4995	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0047	4995	1	0	0	0	0	1	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	1/0	t0048	4995	1	0	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0049	4995	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0050	4995	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0051	4997	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068