JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SVOP_chr12_108902741_109026068	0/0	t0052	4996	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0053	4996	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0054	4995	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0055	4995	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0056	4996	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0057	4995	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0058	4995	1	0	0	0	0	1	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0059	4995	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0060	4996	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0061	4995	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0062	4995	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0063	4996	1	0	1	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0064	4995	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0065	4995	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0066	4995	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/1	t0067	4995	1	0	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0068	4995	1	0	0	0	1	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0069	4997	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0070	4996	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0071	4997	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0072	4995	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0073	4994	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0074	4995	1	0	1	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0075	4995	1	0	0	0	0	1	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0076	4995	1	0	0	0	0	1	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0077	4996	1	0	1	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0078	4994	1	0	1	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0079	4994	1	0	0	0	0	1	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0080	4995	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0081	4994	1	0	0	0	0	1	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0082	4996	1	0	0	1	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0083	4995	1	1	0	0	0	0	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0084	4995	1	0	0	0	0	1	copy fasta	SVOP	chr12	108902741	109026068
SVOP_chr12_108902741_109026068	0/0	t0085	4995	1	0	0	0	0	1	copy fasta	SVOP	chr12	108902741	109026068
SWAP70_chr11_9659077_9757993	0/1	t0001	3150	99	30	19	31	4	14	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	1/0	t0002	3127	69	8	13	36	2	9	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0003	3122	53	7	10	34	0	2	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0004	3122	10	0	0	10	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0005	3150	8	7	1	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0006	3150	7	0	3	0	4	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0007	3127	5	1	3	0	0	1	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0008	3150	3	3	0	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0009	3122	3	2	1	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0010	3127	3	3	0	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0011	3127	3	3	0	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0012	3168	3	0	0	3	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0013	3122	3	3	0	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0014	3150	2	1	1	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0015	3122	2	2	0	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0016	3150	2	2	0	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993