JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SWAP70_chr11_9659077_9757993	0/0	t0017	3150	1	0	0	0	0	1	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0018	3150	1	0	0	1	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0019	3127	1	1	0	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0020	3150	1	0	0	0	1	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0021	3150	1	0	0	1	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0022	3150	1	0	0	0	1	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0023	3150	1	0	0	0	0	1	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0024	3150	1	0	0	1	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0025	3122	1	0	0	1	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0026	3127	1	1	0	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0027	3127	1	1	0	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0028	3127	1	1	0	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0029	3127	1	0	1	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0030	3127	1	1	0	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0031	3127	1	0	0	1	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0032	3127	1	1	0	0	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0033	3150	1	0	0	1	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0034	3127	1	0	0	1	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWAP70_chr11_9659077_9757993	0/0	t0035	3140	1	0	0	1	0	0	copy fasta	SWAP70	chr11	9659077	9757993
SWI5_chr9_128271276_128293989	1/1	t0001	339	342	75	55	161	14	35	copy fasta	SWI5	chr9	128271276	128293989
SWI5_chr9_128271276_128293989	0/0	t0002	339	28	0	0	25	0	3	copy fasta	SWI5	chr9	128271276	128293989
SWI5_chr9_128271276_128293989	0/0	t0003	339	7	7	0	0	0	0	copy fasta	SWI5	chr9	128271276	128293989
SWI5_chr9_128271276_128293989	0/0	t0004	339	5	5	0	0	0	0	copy fasta	SWI5	chr9	128271276	128293989
SWI5_chr9_128271276_128293989	0/0	t0005	339	2	1	1	0	0	0	copy fasta	SWI5	chr9	128271276	128293989
SWI5_chr9_128271276_128293989	0/0	t0006	339	2	0	0	0	0	2	copy fasta	SWI5	chr9	128271276	128293989
SWSAP1_chr19_11369666_11381169	1/1	t0001	169	402	98	72	170	16	44	copy fasta	SWSAP1	chr19	11369666	11381169
SWT1_chr1_185152167_185296781	1/1	t0001	1136	272	60	67	109	12	22	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	t0002	1136	20	0	0	18	0	2	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	t0003	1136	15	15	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	t0004	1136	12	12	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	t0005	1136	1	0	1	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	t0006	1136	1	0	0	1	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	t0007	1136	1	1	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	t0008	1136	1	1	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	t0009	1136	1	1	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	t0010	1136	1	1	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SWT1_chr1_185152167_185296781	0/0	t0011	1136	1	1	0	0	0	0	copy fasta	SWT1	chr1	185152167	185296781
SYAP1_chrX_16714612_16770340	0/1	t0001	5095	83	10	15	49	3	5	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	1/0	t0002	5095	48	7	15	9	5	11	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0003	5098	37	14	6	15	1	1	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0004	5096	14	1	4	8	0	1	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0005	5096	10	0	2	7	0	1	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0006	5096	8	1	2	5	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0007	5094	6	2	0	4	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0008	5099	6	2	0	3	0	1	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0009	5096	5	0	1	2	1	1	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0010	5095	5	3	2	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0011	5098	4	4	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0012	5099	4	1	1	1	0	1	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0013	5098	4	0	0	4	0	0	copy fasta	SYAP1	chrX	16714612	16770340