JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYAP1_chrX_16714612_16770340	0/0	t0014	5094	4	4	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0015	5095	2	2	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0016	5098	2	0	0	2	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0017	5098	2	0	0	2	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0018	5094	2	0	1	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0019	5099	2	2	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0020	5094	2	0	0	0	1	1	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0021	5095	2	2	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0022	5098	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0023	5095	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0024	5093	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0025	5095	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0026	5095	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0027	5094	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0028	5095	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0029	5096	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0030	5095	1	0	1	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0031	5096	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0032	5098	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0033	5098	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0034	5095	1	0	0	0	0	1	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0035	5097	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0036	5098	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0037	5098	1	0	0	0	0	1	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0038	5098	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0039	5098	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0040	5099	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0041	5099	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0042	5098	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0043	5089	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0044	5088	1	0	1	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0045	5096	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0046	5095	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0047	5095	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0048	5095	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0049	5096	1	0	1	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0050	5096	1	0	0	0	0	1	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0051	5096	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0052	5093	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0053	5098	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0054	5094	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0055	5094	1	0	1	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0056	5094	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0057	5097	1	0	0	1	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0058	5095	1	0	1	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYAP1_chrX_16714612_16770340	0/0	t0059	5095	1	1	0	0	0	0	copy fasta	SYAP1	chrX	16714612	16770340
SYBU_chr8_109568978_109649822	1/1	t0001	1092	286	64	64	107	14	35	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	t0002	1092	31	26	4	0	0	1	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	t0003	1092	2	0	2	0	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	t0004	1092	2	2	0	0	0	0	copy fasta	SYBU	chr8	109568978	109649822