JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYBU_chr8_109568978_109649822	0/0	t0005	1092	1	1	0	0	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	t0006	1092	1	1	0	0	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYBU_chr8_109568978_109649822	0/0	t0007	1092	1	0	0	1	0	0	copy fasta	SYBU	chr8	109568978	109649822
SYCE1L_chr16_77194408_77218215	0/0	t0001	329	204	6	44	132	9	13	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/1	t0002	329	147	31	22	76	5	12	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	t0003	329	28	26	2	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	t0004	329	15	5	5	2	0	3	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	t0005	329	15	10	0	0	0	5	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	1/0	t0006	329	10	9	0	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	t0007	329	8	1	3	1	0	3	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	t0008	329	6	6	0	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	t0009	329	5	1	0	0	0	4	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	t0010	329	1	1	0	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	t0011	329	1	1	0	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	t0012	329	1	1	0	0	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1L_chr16_77194408_77218215	0/0	t0013	329	1	0	0	1	0	0	copy fasta	SYCE1L	chr16	77194408	77218215
SYCE1_chr10_133549847_133570583	1/1	t0001	200	283	70	49	128	5	29	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	t0002	210	84	0	14	61	3	6	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	t0003	200	15	14	1	0	0	0	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	t0004	200	1	0	0	0	0	1	copy fasta	SYCE1	chr10	133549847	133570583
SYCE1_chr10_133549847_133570583	0/0	t0005	210	1	0	0	1	0	0	copy fasta	SYCE1	chr10	133549847	133570583
SYCE2_chr19_12893786_12924293	1/1	t0001	592	359	82	74	149	15	37	copy fasta	SYCE2	chr19	12893786	12924293
SYCE2_chr19_12893786_12924293	0/0	t0002	592	10	7	3	0	0	0	copy fasta	SYCE2	chr19	12893786	12924293
SYCE2_chr19_12893786_12924293	0/0	t0003	592	3	0	1	0	1	1	copy fasta	SYCE2	chr19	12893786	12924293
SYCE2_chr19_12893786_12924293	0/0	t0004	592	2	2	0	0	0	0	copy fasta	SYCE2	chr19	12893786	12924293
SYCE2_chr19_12893786_12924293	0/0	t0005	592	2	2	0	0	0	0	copy fasta	SYCE2	chr19	12893786	12924293
SYCE2_chr19_12893786_12924293	0/0	t0006	592	1	0	0	1	0	0	copy fasta	SYCE2	chr19	12893786	12924293
SYCE2_chr19_12893786_12924293	0/0	t0007	592	1	1	0	0	0	0	copy fasta	SYCE2	chr19	12893786	12924293
SYCE3_chr22_50546112_50567919	1/1	t0001	196	414	98	74	180	12	48	copy fasta	SYCE3	chr22	50546112	50567919
SYCN_chr19_39197825_39209263	1/1	t0001	172	371	80	76	153	16	44	copy fasta	SYCN	chr19	39197825	39209263
SYCN_chr19_39197825_39209263	0/0	t0002	172	2	2	0	0	0	0	copy fasta	SYCN	chr19	39197825	39209263
SYCN_chr19_39197825_39209263	0/0	t0003	172	2	0	0	0	2	0	copy fasta	SYCN	chr19	39197825	39209263
SYCN_chr19_39197825_39209263	0/0	t0004	172	1	0	0	1	0	0	copy fasta	SYCN	chr19	39197825	39209263
SYCP1_chr1_114849863_115000370	0/1	t0001	532	153	32	35	63	6	16	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	1/0	t0002	532	148	47	21	61	8	10	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	t0003	531	5	5	0	0	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	t0004	532	4	0	0	4	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	t0005	532	1	0	0	1	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP1_chr1_114849863_115000370	0/0	t0006	532	1	0	0	1	0	0	copy fasta	SYCP1	chr1	114849863	115000370
SYCP2L_chr6_10882052_10979309	0/1	t0001	472	257	64	40	125	4	23	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	1/0	t0002	471	95	32	20	19	10	13	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	t0003	472	1	0	0	1	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2L_chr6_10882052_10979309	0/0	t0004	472	1	0	0	1	0	0	copy fasta	SYCP2L	chr6	10882052	10979309
SYCP2_chr20_59858571_59938637	1/1	t0001	949	260	71	48	108	12	19	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	t0002	948	8	5	1	2	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	t0003	949	2	0	2	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	t0004	949	1	0	0	1	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	t0005	948	1	1	0	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	t0006	949	1	0	0	0	0	1	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	t0007	949	1	1	0	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637