JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYCP2_chr20_59858571_59938637	0/0	t0008	949	1	0	0	1	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP2_chr20_59858571_59938637	0/0	t0009	948	1	0	1	0	0	0	copy fasta	SYCP2	chr20	59858571	59938637
SYCP3_chr12_101723648_101744462	1/1	t0001	409	342	83	62	145	18	32	copy fasta	SYCP3	chr12	101723648	101744462
SYCP3_chr12_101723648_101744462	0/0	t0002	409	60	0	0	56	0	4	copy fasta	SYCP3	chr12	101723648	101744462
SYCP3_chr12_101723648_101744462	0/0	t0003	409	8	0	8	0	0	0	copy fasta	SYCP3	chr12	101723648	101744462
SYCP3_chr12_101723648_101744462	0/0	t0004	409	8	8	0	0	0	0	copy fasta	SYCP3	chr12	101723648	101744462
SYCP3_chr12_101723648_101744462	0/0	t0005	409	5	4	1	0	0	0	copy fasta	SYCP3	chr12	101723648	101744462
SYCP3_chr12_101723648_101744462	0/0	t0006	409	1	0	0	1	0	0	copy fasta	SYCP3	chr12	101723648	101744462
SYCP3_chr12_101723648_101744462	0/0	t0007	409	1	1	0	0	0	0	copy fasta	SYCP3	chr12	101723648	101744462
SYCP3_chr12_101723648_101744462	0/0	t0008	409	1	0	1	0	0	0	copy fasta	SYCP3	chr12	101723648	101744462
SYDE1_chr19_15102401_15119974	0/0	t0001	1044	105	8	22	56	2	17	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/1	t0002	1046	88	12	24	32	4	15	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0003	1047	56	8	11	23	4	10	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	1/0	t0004	1045	31	0	0	26	3	1	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0005	1045	28	3	8	14	0	3	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0006	1044	28	27	1	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0007	1044	20	13	1	6	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0008	1045	14	3	4	5	0	2	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0009	1045	10	10	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0010	1044	9	2	3	1	3	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0011	1045	6	2	2	2	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0012	1044	2	0	0	2	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0013	1046	2	2	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0014	1045	2	1	1	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0015	1044	2	1	1	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0016	1046	2	0	0	1	0	1	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0017	1046	1	0	0	1	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0018	1046	1	0	0	1	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0019	1044	1	0	0	0	0	1	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0020	1044	1	0	0	1	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0021	1045	1	0	1	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0022	1046	1	0	0	1	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0023	1044	1	1	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0024	1045	1	1	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0025	1043	1	0	0	1	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0026	1046	1	1	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0027	1044	1	0	1	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0028	1045	1	0	0	1	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0029	1044	1	0	0	1	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0030	1034	1	0	0	1	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0031	1044	1	0	0	1	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0032	1045	1	1	0	0	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE1_chr19_15102401_15119974	0/0	t0033	1044	1	0	0	1	0	0	copy fasta	SYDE1	chr19	15102401	15119974
SYDE2_chr1_85151889_85206016	1/1	t0001	1882	285	37	49	145	15	37	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0002	1882	35	1	7	24	1	2	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0003	1882	19	6	11	0	2	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0004	1882	18	17	0	0	0	1	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0005	1882	11	11	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0006	1882	8	8	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0007	1882	5	3	2	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016