JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYDE2_chr1_85151889_85206016	0/0	t0008	1882	3	2	1	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0009	1882	2	0	0	2	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0010	1882	2	0	2	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0011	1882	2	2	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0012	1882	2	0	2	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0013	1882	1	0	0	1	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0014	1882	1	1	0	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0015	1882	1	0	1	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0016	1882	1	0	0	1	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0017	1882	1	0	0	1	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYDE2_chr1_85151889_85206016	0/0	t0018	1882	1	0	1	0	0	0	copy fasta	SYDE2	chr1	85151889	85206016
SYF2_chr1_25217276_25237502	1/1	t0001	1026	256	59	52	91	14	38	copy fasta	SYF2	chr1	25217276	25237502
SYF2_chr1_25217276_25237502	0/0	t0002	1026	33	30	3	0	0	0	copy fasta	SYF2	chr1	25217276	25237502
SYF2_chr1_25217276_25237502	0/0	t0003	1026	4	0	0	4	0	0	copy fasta	SYF2	chr1	25217276	25237502
SYF2_chr1_25217276_25237502	0/0	t0004	1026	3	3	0	0	0	0	copy fasta	SYF2	chr1	25217276	25237502
SYF2_chr1_25217276_25237502	0/0	t0005	1026	3	2	1	0	0	0	copy fasta	SYF2	chr1	25217276	25237502
SYF2_chr1_25217276_25237502	0/0	t0006	1026	1	0	0	1	0	0	copy fasta	SYF2	chr1	25217276	25237502
SYK_chr9_90796819_90903549	0/1	t0001	3066	62	8	2	49	0	2	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	1/0	t0002	3066	39	17	10	9	1	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0003	3066	28	5	6	11	1	5	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0004	3066	22	2	12	6	1	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0005	3066	19	8	1	9	0	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0006	3066	17	5	3	7	0	2	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0007	3066	15	0	3	6	2	4	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0008	3067	11	0	0	10	1	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0009	3066	11	4	2	4	0	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0010	3066	11	7	0	4	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0011	3067	10	0	0	10	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0012	3066	8	5	0	2	0	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0013	3066	8	1	6	1	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0014	3066	8	1	3	1	1	2	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0015	3066	7	4	0	3	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0016	3066	6	0	0	5	0	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0017	3066	5	0	1	2	0	2	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0018	3067	5	0	0	4	0	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0019	3066	5	0	2	2	0	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0020	3066	4	0	2	0	0	2	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0021	3066	4	4	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0022	3066	3	1	2	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0023	3067	3	0	0	3	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0024	3066	3	0	0	2	0	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0025	3066	3	0	1	2	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0026	3065	3	0	3	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0027	3066	3	2	1	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0028	3067	2	0	0	2	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0029	3066	2	0	0	2	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0030	3066	2	0	1	0	0	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0031	3066	2	0	0	0	0	2	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0032	3066	2	0	2	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0033	3066	2	0	0	1	1	0	copy fasta	SYK	chr9	90796819	90903549