JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYK_chr9_90796819_90903549	0/0	t0034	3066	2	0	2	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0035	3066	2	0	1	0	0	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0036	3066	1	0	0	1	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0037	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0038	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0039	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0040	3066	1	0	0	0	0	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0041	3066	1	0	1	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0042	3066	1	0	1	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0043	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0044	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0045	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0046	3067	1	0	0	0	1	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0047	3067	1	0	0	1	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0048	3067	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0049	3067	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0050	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0051	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0052	3066	1	0	0	0	0	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0053	3066	1	0	0	1	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0054	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0055	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0056	3066	1	0	0	1	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0057	3066	1	0	0	1	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0058	3066	1	0	0	0	0	1	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0059	3066	1	0	1	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0060	3066	1	0	0	0	1	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0061	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0062	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0063	3066	1	0	1	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0064	3066	1	0	0	1	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0065	3066	1	0	1	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0066	3066	1	0	0	1	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0067	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0068	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0069	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0070	3066	1	0	1	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0071	3066	1	1	0	0	0	0	copy fasta	SYK	chr9	90796819	90903549
SYK_chr9_90796819_90903549	0/0	t0072	3066	1	0	0	0	0	1	copy fasta	SYK	chr9	90796819	90903549
SYMPK_chr19_45810410_45868147	0/0	t0001	252	110	37	30	20	7	16	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	t0002	253	88	8	5	68	3	4	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	1/0	t0003	253	66	10	21	25	2	7	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/1	t0004	252	58	23	20	1	4	9	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	t0005	252	31	0	0	31	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	t0006	236	25	0	0	22	2	1	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	t0007	253	8	8	0	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	t0008	253	2	0	0	2	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	t0009	249	1	0	0	0	0	1	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	t0010	252	1	0	0	1	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYMPK_chr19_45810410_45868147	0/0	t0011	252	1	0	1	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147