Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMS1_chr10_42777795_42839937	0/0	t0010	3910	3	0	0	0	0	3	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0011	3905	3	2	1	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0012	3910	3	0	0	3	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0013	3905	3	2	1	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0014	3910	2	2	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0015	3905	2	1	1	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0016	3910	2	0	1	0	1	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0017	3910	2	0	2	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0018	3910	2	2	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0019	3905	1	0	0	0	0	1	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0020	3910	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0021	3910	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0022	3910	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0023	3910	1	0	0	0	0	1	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0024	3910	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0025	3904	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0026	3904	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0027	3910	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0028	3911	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0029	3910	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0030	3910	1	0	0	0	0	1	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0031	3906	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0032	3905	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0033	3905	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMT2_chr7_112814147_112944875	1/1	t0001	2723	84	23	21	21	4	13	copy fasta	BMT2	chr7	112814147	112944875
BMT2_chr7_112814147_112944875	0/0	t0002	2723	36	12	14	6	1	3	copy fasta	BMT2	chr7	112814147	112944875
BMT2_chr7_112814147_112944875	0/0	t0003	2723	21	16	2	0	0	3	copy fasta	BMT2	chr7	112814147	112944875
BMT2_chr7_112814147_112944875	0/0	t0004	2723	16	16	0	0	0	0	copy fasta	BMT2	chr7	112814147	112944875
BMT2_chr7_112814147_112944875	0/0	t0005	2723	15	1	4	0	3	7	copy fasta	BMT2	chr7	112814147	112944875
BMT2_chr7_112814147_112944875	0/0	t0006	2723	9	9	0	0	0	0	copy fasta	BMT2	chr7	112814147	112944875
BMT2_chr7_112814147_112944875	0/0	t0007	2723	6	2	4	0	0	0	copy fasta	BMT2	chr7	112814147	112944875
BMT2_chr7_112814147_112944875	0/0	t0008	2723	5	4	1	0	0	0	copy fasta	BMT2	chr7	112814147	112944875
BMT2_chr7_112814147_112944875	0/0	t0009	2723	5	5	0	0	0	0	copy fasta	BMT2	chr7	112814147	112944875
BMT2_chr7_112814147_112944875	0/0	t0010	2723	4	0	0	4	0	0	copy fasta	BMT2	chr7	112814147	112944875
BMT2_chr7_112814147_112944875	0/0	t0011	2723	3	0	0	3	0	0	copy fasta	BMT2	chr7	112814147	112944875
BMT2_chr7_112814147_112944875	0/0	t0012	2723	1	1	0	0	0	0	copy fasta	BMT2	chr7	112814147	112944875
BMT2_chr7_112814147_112944875	0/0	t0013	2723	1	1	0	0	0	0	copy fasta	BMT2	chr7	112814147	112944875
BMX_chrX_15495807_15561519	1/1	t0001	516	216	64	48	69	9	24	copy fasta	BMX	chrX	15495807	15561519
BNC1_chr15_83250884_83289664	1/0	t0001	1595	168	20	39	83	5	20	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/1	t0002	1597	74	45	17	0	5	6	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	t0003	1597	40	12	0	24	0	4	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	t0004	1597	15	13	2	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	t0005	1595	2	2	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	t0006	1595	1	0	0	1	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	t0007	1597	1	0	1	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	t0008	1597	1	1	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	t0009	1597	1	1	0	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC1_chr15_83250884_83289664	0/0	t0010	1595	1	0	1	0	0	0	copy fasta	BNC1	chr15	83250884	83289664
BNC2_chr9_16404503_16875670	0/0	t0001	9495	22	6	1	13	0	2	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0002	9496	5	0	0	5	0	0	copy fasta	BNC2	chr9	16404503	16875670