JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYMPK_chr19_45810410_45868147	0/0	t0012	252	1	0	1	0	0	0	copy fasta	SYMPK	chr19	45810410	45868147
SYN1_chrX_47566901_47624857	1/1	t0001	1093	275	73	52	111	11	26	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	t0002	1093	4	3	1	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	t0003	1093	1	1	0	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	t0004	1093	1	1	0	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN1_chrX_47566901_47624857	0/0	t0005	1093	1	0	1	0	0	0	copy fasta	SYN1	chrX	47566901	47624857
SYN2_chr3_11999388_12197032	0/0	t0001	1572	116	31	21	50	3	11	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/1	t0002	1572	97	22	15	52	2	5	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	t0003	1572	12	12	0	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	t0004	1572	9	1	3	0	1	4	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	t0005	1574	5	5	0	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	t0006	1572	5	0	0	5	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	t0007	1581	5	5	0	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	t0008	1572	3	0	3	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	t0009	1572	3	2	1	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	t0010	1574	2	2	0	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	t0011	1574	2	0	2	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	1/0	t0012	1572	1	0	0	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	t0013	1572	1	0	1	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	t0014	1572	1	0	0	1	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	t0015	1572	1	1	0	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN2_chr3_11999388_12197032	0/0	t0016	1572	1	1	0	0	0	0	copy fasta	SYN2	chr3	11999388	12197032
SYN3_chr22_32502820_33063381	0/0	t0001	6125	18	1	7	6	0	4	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0002	6125	14	0	1	8	1	4	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0003	6125	13	4	5	3	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0004	6134	12	11	1	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0005	6136	6	5	0	0	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0006	6105	5	0	4	0	1	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0007	6134	5	0	1	2	2	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0008	6125	5	0	0	0	0	5	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0009	6128	4	4	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0010	6123	4	2	2	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0011	6105	4	4	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0012	6125	4	0	0	3	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0013	6125	4	0	3	0	1	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0014	6130	3	3	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0015	6122	3	0	1	1	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0016	6122	2	2	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0017	6130	2	2	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0018	6133	2	2	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0019	6125	2	2	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0020	6124	2	2	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0021	6140	2	1	1	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0022	6136	2	0	0	0	0	2	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0023	6134	2	2	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0024	6126	2	2	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0025	6136	2	0	2	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0026	6125	2	0	2	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0027	6125	2	0	0	2	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0028	6125	2	0	0	2	0	0	copy fasta	SYN3	chr22	32502820	33063381