JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYN3_chr22_32502820_33063381	0/0	t0029	6130	2	0	1	0	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0030	6120	2	0	1	0	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0031	6128	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0032	6130	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0033	6102	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0034	6130	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0035	6132	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0036	6126	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0037	6124	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0038	6132	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0039	6132	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0040	6128	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0041	6120	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0042	6102	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0043	6140	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0044	6123	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0045	6138	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0046	6136	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0047	6136	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0048	6136	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0049	6130	1	0	1	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0050	6134	1	0	0	0	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0051	6132	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0052	6120	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0053	6127	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0054	6127	1	0	0	0	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0055	6125	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0056	6123	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0057	6122	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0058	6136	1	0	1	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0059	6125	1	0	0	0	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0060	6127	1	0	0	1	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0061	6136	1	0	0	1	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0062	6132	1	0	0	1	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0063	6132	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0064	6132	1	0	0	0	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0065	6130	1	0	1	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0066	6127	1	0	0	1	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0067	6125	1	0	0	1	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0068	6125	1	0	0	1	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0069	6125	1	0	0	0	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0070	6134	1	0	0	0	1	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0071	6130	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0072	6127	1	0	1	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0073	6125	1	0	0	0	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0074	6125	1	0	0	0	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0075	6125	1	0	0	1	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0076	6125	1	0	1	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0077	6134	1	0	0	0	0	1	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0078	6125	1	0	0	0	0	1	copy fasta	SYN3	chr22	32502820	33063381