JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYN3_chr22_32502820_33063381	0/0	t0079	6134	1	0	1	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYN3_chr22_32502820_33063381	0/0	t0080	6124	1	1	0	0	0	0	copy fasta	SYN3	chr22	32502820	33063381
SYNCRIP_chr6_85608976_85647886	1/1	t0001	883	361	84	50	178	14	33	copy fasta	SYNCRIP	chr6	85608976	85647886
SYNCRIP_chr6_85608976_85647886	0/0	t0002	883	1	0	0	0	0	1	copy fasta	SYNCRIP	chr6	85608976	85647886
SYNCRIP_chr6_85608976_85647886	0/0	t0003	883	1	0	0	1	0	0	copy fasta	SYNCRIP	chr6	85608976	85647886
SYNCRIP_chr6_85608976_85647886	0/0	t0004	883	1	0	0	1	0	0	copy fasta	SYNCRIP	chr6	85608976	85647886
SYNC_chr1_32674906_32707770	0/1	t0001	2055	110	4	27	56	8	14	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0002	2055	71	33	7	18	4	9	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0003	2056	37	0	12	23	0	2	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0004	2056	29	11	3	8	0	7	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0005	2048	24	23	1	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	1/0	t0006	2055	9	6	2	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0007	2055	5	0	0	5	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0008	2056	4	3	1	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0009	2055	4	2	2	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0010	2057	2	0	2	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0011	2049	2	2	0	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0012	2048	2	2	0	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0013	2055	2	1	1	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0014	2055	2	2	0	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0015	2054	2	2	0	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0016	2055	2	2	0	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0017	2055	1	0	0	1	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0018	2055	1	0	0	1	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0019	2055	1	0	0	0	0	1	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0020	2055	1	1	0	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0021	2054	1	1	0	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0022	2056	1	0	0	0	0	1	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0023	2056	1	0	0	0	0	1	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0024	2055	1	1	0	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0025	2055	1	0	1	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0026	2055	1	0	0	0	0	1	copy fasta	SYNC	chr1	32674906	32707770
SYNC_chr1_32674906_32707770	0/0	t0027	2056	1	0	1	0	0	0	copy fasta	SYNC	chr1	32674906	32707770
SYNDIG1L_chr14_74400899_74431210	0/0	t0001	1993	129	25	31	56	6	11	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	1/1	t0002	1993	128	19	19	74	7	7	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0003	1993	74	16	15	28	1	14	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0004	1993	26	10	2	12	0	2	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0005	1993	8	0	0	8	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0006	1993	6	6	0	0	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0007	1993	4	4	0	0	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0008	1993	4	4	0	0	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0009	1993	3	2	0	1	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0010	1993	2	0	0	2	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0011	1993	2	1	0	1	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0012	1993	2	0	0	0	0	2	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0013	1993	2	0	0	0	2	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0014	1993	1	1	0	0	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0015	1993	1	0	0	0	0	1	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0016	1993	1	1	0	0	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0017	1993	1	0	1	0	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210