JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYNDIG1L_chr14_74400899_74431210	0/0	t0018	1993	1	0	0	1	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0019	1993	1	0	0	1	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0020	1993	1	0	0	0	0	1	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0021	1993	1	1	0	0	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0022	1993	1	0	0	1	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0023	1993	1	1	0	0	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0024	1993	1	1	0	0	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0025	1993	1	0	0	0	0	1	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0026	1993	1	0	0	0	0	1	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1L_chr14_74400899_74431210	0/0	t0027	1993	1	0	0	1	0	0	copy fasta	SYNDIG1L	chr14	74400899	74431210
SYNDIG1_chr20_24464629_24671616	1/1	t0001	1316	233	74	45	69	10	33	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0002	1316	11	0	0	11	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0003	1316	8	2	1	3	0	2	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0004	1316	3	3	0	0	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0005	1316	2	2	0	0	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0006	1316	2	2	0	0	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0007	1316	2	0	0	2	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0008	1316	1	1	0	0	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0009	1316	1	0	0	0	1	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0010	1316	1	1	0	0	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0011	1316	1	0	0	0	1	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0012	1316	1	0	0	1	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0013	1316	1	1	0	0	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0014	1316	1	0	1	0	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0015	1316	1	0	0	0	0	1	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNDIG1_chr20_24464629_24671616	0/0	t0016	1316	1	0	1	0	0	0	copy fasta	SYNDIG1	chr20	24464629	24671616
SYNE1_chr6_152116687_152173312	0/0	t0001	858	103	8	19	58	3	15	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	t0002	856	88	8	10	60	4	6	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/1	t0003	857	85	19	20	37	3	5	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	1/0	t0004	858	80	36	20	9	4	10	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	t0005	857	53	20	4	23	3	3	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	t0006	857	15	0	1	10	0	4	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	t0007	857	3	3	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	t0008	857	2	2	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	t0009	857	1	0	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	t0010	857	1	0	0	0	0	1	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	t0011	858	1	0	0	0	0	1	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	t0012	856	1	0	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	t0013	857	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	t0014	856	1	0	0	0	0	1	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152173312	0/0	t0015	858	1	0	1	0	0	0	copy fasta	SYNE1	chr6	152116687	152173312
SYNE1_chr6_152116687_152642362	0/1	t0001	1314	31	14	6	8	0	2	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	1/0	t0002	1315	26	18	5	1	0	1	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0003	1315	21	5	5	9	1	1	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0004	1314	18	14	2	1	0	1	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0005	1313	15	5	1	7	0	2	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0006	1315	15	0	3	9	0	3	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0007	1313	13	1	1	11	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0008	1314	10	0	5	4	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0009	1315	6	1	3	2	0	0	copy fasta	SYNE1	chr6	152116687	152642362