JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYNE1_chr6_152116687_152642362	0/0	t0010	1314	5	0	1	3	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0011	1314	4	0	0	3	0	1	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0012	1314	2	0	0	1	0	1	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0013	1315	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0014	1314	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0015	1314	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0016	1314	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0017	1314	1	0	0	0	1	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0018	1314	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0019	1314	1	0	0	1	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE1_chr6_152116687_152642362	0/0	t0020	1314	1	1	0	0	0	0	copy fasta	SYNE1	chr6	152116687	152642362
SYNE2_chr14_63848004_64231433	0/0	t0001	1099	58	28	7	18	1	4	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	1/1	t0002	1099	31	2	5	11	0	11	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	t0003	1099	29	7	8	11	1	2	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	t0004	1099	17	5	4	7	0	1	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	t0005	1099	4	4	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	t0006	1099	4	4	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	t0007	1099	3	3	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	t0008	1099	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	t0009	1099	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	t0010	1099	1	1	0	0	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE2_chr14_63848004_64231433	0/0	t0011	1099	1	0	0	1	0	0	copy fasta	SYNE2	chr14	63848004	64231433
SYNE3_chr14_95402266_95521650	0/0	t0001	10624	19	0	6	13	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0002	10628	10	4	0	5	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0003	10618	10	4	0	6	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0004	10624	10	0	0	9	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0005	10620	9	0	3	5	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0006	10623	9	0	2	5	0	2	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0007	10619	8	4	3	0	1	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0008	10623	7	6	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0009	10625	7	0	2	5	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0010	10618	6	0	0	6	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0011	10620	5	0	0	5	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0012	10627	5	0	0	3	1	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0013	10629	5	0	0	5	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0014	10628	5	0	0	5	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	1/0	t0015	10630	4	0	0	2	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0016	10630	4	0	4	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0017	10627	4	1	2	0	1	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0018	10629	4	1	3	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0019	10631	4	0	2	1	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0020	10625	4	2	2	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0021	10626	4	0	0	1	0	3	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0022	10614	4	4	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0023	10625	3	3	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0024	10622	3	3	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0025	10632	3	0	1	2	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0026	10624	3	0	0	3	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0027	10627	3	0	0	3	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0028	10627	3	0	3	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650