JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYNE3_chr14_95402266_95521650	0/0	t0179	10624	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0180	10627	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0181	10618	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0182	10624	1	0	0	0	1	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0183	10630	1	0	0	0	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0184	10629	1	0	0	0	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0185	10631	1	0	0	0	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0186	10629	1	0	0	0	1	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0187	10631	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0188	10629	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0189	10633	1	0	0	0	1	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0190	10628	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0191	10632	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0192	10621	1	0	0	0	1	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0193	10623	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0194	10632	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0195	10625	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0196	10632	1	0	0	0	1	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/1	t0197	10630	1	0	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0198	10634	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0199	10625	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0200	10625	1	0	0	0	1	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0201	10624	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0202	10619	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0203	10624	1	0	0	1	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0204	10620	1	0	0	0	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0205	10615	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0206	10631	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0207	10616	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0208	10620	1	0	0	0	0	1	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0209	10630	1	0	1	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0210	10618	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0211	10626	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0212	10628	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE3_chr14_95402266_95521650	0/0	t0213	10636	1	1	0	0	0	0	copy fasta	SYNE3	chr14	95402266	95521650
SYNE4_chr19_35998307_36013813	1/1	t0001	163	371	88	80	145	12	44	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	t0002	163	4	4	0	0	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNE4_chr19_35998307_36013813	0/0	t0003	163	1	0	0	1	0	0	copy fasta	SYNE4	chr19	35998307	36013813
SYNGAP1_chr6_33415065_33458689	0/1	t0001	1984	291	82	63	101	15	29	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	t0002	1984	2	2	0	0	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	t0003	1984	2	2	0	0	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	t0004	1984	2	2	0	0	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	t0005	1984	1	0	0	1	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	t0006	1984	1	0	0	1	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	t0007	1984	1	1	0	0	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	t0008	1984	1	0	0	0	1	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	t0009	1984	1	0	0	0	0	1	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	t0010	1984	1	1	0	0	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	t0011	1984	1	0	0	1	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	t0012	1984	1	0	0	1	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689