JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYNGAP1_chr6_33415065_33458689	0/0	t0013	1984	1	0	0	1	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGAP1_chr6_33415065_33458689	0/0	t0014	1984	1	0	1	0	0	0	copy fasta	SYNGAP1	chr6	33415065	33458689
SYNGR1_chr22_39344991_39390575	0/1	t0001	3682	172	26	44	69	10	22	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	1/0	t0002	3682	28	6	12	0	0	9	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0003	3682	15	14	1	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0004	3682	15	14	1	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0005	3680	13	13	0	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0006	3682	5	4	1	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0007	3682	5	5	0	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0008	3682	4	1	2	0	1	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0009	3682	4	0	0	4	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0010	3682	4	0	0	0	0	4	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0011	3682	3	3	0	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0012	3682	3	0	0	0	0	3	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0013	3682	3	3	0	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0014	3682	2	0	0	0	2	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0015	3682	2	0	2	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0016	3682	2	0	0	0	0	2	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0017	3682	2	1	1	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0018	3682	2	0	1	1	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0019	3682	2	0	0	2	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0020	3682	2	2	0	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0021	3682	1	1	0	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0022	3682	1	0	1	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0023	3682	1	1	0	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0024	3682	1	0	0	1	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0025	3682	1	0	0	0	0	1	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0026	3682	1	0	0	0	1	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0027	3682	1	0	0	1	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0028	3682	1	0	0	0	0	1	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0029	3682	1	0	0	0	0	1	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0030	3682	1	0	0	0	0	1	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0031	3682	1	1	0	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR1_chr22_39344991_39390575	0/0	t0032	3682	1	1	0	0	0	0	copy fasta	SYNGR1	chr22	39344991	39390575
SYNGR2_chr17_78163581_78177720	1/0	t0001	821	372	75	56	192	11	37	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	t0002	821	44	8	18	2	5	11	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	t0003	821	11	11	0	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	t0004	821	10	0	3	7	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	t0005	821	2	0	2	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	t0006	821	2	0	0	0	0	2	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	t0007	821	1	1	0	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	t0008	821	1	0	0	1	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	t0009	821	1	1	0	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	t0010	821	1	0	0	1	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	t0011	821	1	1	0	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	t0012	821	1	0	1	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	t0013	821	1	1	0	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/1	t0014	821	1	0	0	0	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR2_chr17_78163581_78177720	0/0	t0015	821	1	0	0	1	0	0	copy fasta	SYNGR2	chr17	78163581	78177720
SYNGR3_chr16_1984970_1999275	1/0	t0001	1337	400	84	77	175	16	47	copy fasta	SYNGR3	chr16	1984970	1999275