Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BNC2_chr9_16404503_16875670	0/0	t0003	9491	5	5	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0004	9513	4	0	0	2	0	2	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0005	9515	3	1	0	1	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0006	9461	3	1	0	1	1	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0007	9489	3	3	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0008	9495	3	3	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0009	9497	3	3	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0010	9499	3	0	0	3	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0011	9497	3	0	0	2	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0012	9503	2	0	2	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0013	9499	2	2	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0014	9487	2	2	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0015	9519	2	0	1	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0016	9497	2	0	0	0	0	2	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0017	9516	2	0	0	2	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0018	9521	2	0	2	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0019	9525	2	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0020	9491	2	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0021	9487	2	2	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0022	9495	2	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0023	9497	2	1	0	0	1	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0024	9493	2	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0025	9505	2	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0026	9493	2	2	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0027	9497	2	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0028	9499	2	2	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0029	9503	2	2	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0030	9495	2	0	0	2	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0031	9501	2	0	0	2	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0032	9495	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0033	9497	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0034	9501	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0035	9495	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0036	9511	1	0	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0037	9489	1	0	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	1/0	t0038	9509	1	0	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0039	9509	1	0	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0040	9501	1	0	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0041	9505	1	0	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0042	9507	1	0	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0043	9509	1	0	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0044	9511	1	0	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0045	9517	1	0	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0046	9517	1	0	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0047	9523	1	0	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0048	9520	1	0	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0049	9510	1	0	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0050	9511	1	0	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0051	9509	1	0	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0052	9515	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670