JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYNGR3_chr16_1984970_1999275	0/1	t0002	1337	9	0	5	0	2	1	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	t0003	1337	7	7	0	0	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	t0004	1337	2	0	0	2	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	t0005	1337	2	0	0	2	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	t0006	1337	1	0	0	1	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	t0007	1337	1	1	0	0	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	t0008	1337	1	0	0	0	0	1	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	t0009	1337	1	1	0	0	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	t0010	1337	1	0	0	1	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	t0011	1337	1	1	0	0	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	t0012	1337	1	0	0	0	0	1	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR3_chr16_1984970_1999275	0/0	t0013	1337	1	0	0	1	0	0	copy fasta	SYNGR3	chr16	1984970	1999275
SYNGR4_chr19_48359367_48381377	1/1	t0001	338	427	100	78	189	12	46	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	t0002	338	2	0	0	2	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNGR4_chr19_48359367_48381377	0/0	t0003	338	1	0	0	1	0	0	copy fasta	SYNGR4	chr19	48359367	48381377
SYNJ1_chr21_32623763_32733013	0/0	t0001	3139	137	27	22	70	3	15	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	1/0	t0002	3133	110	14	21	61	3	10	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/1	t0003	3139	42	19	6	8	0	8	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0004	3139	22	10	3	4	3	2	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0005	3139	5	4	1	0	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0006	3139	5	0	0	5	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0007	3133	3	0	0	3	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0008	3133	3	2	0	0	1	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0009	3139	2	0	2	0	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0010	3139	2	0	0	2	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0011	3139	2	0	0	2	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0012	3139	2	2	0	0	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0013	3139	1	1	0	0	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0014	3139	1	0	0	0	0	1	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0015	3139	1	0	0	0	0	1	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0016	3139	1	0	0	1	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0017	3139	1	0	0	1	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0018	3139	1	0	0	0	0	1	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0019	3139	1	1	0	0	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0020	3133	1	1	0	0	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0021	3133	1	0	1	0	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0022	3133	1	1	0	0	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ1_chr21_32623763_32733013	0/0	t0023	3133	1	0	0	1	0	0	copy fasta	SYNJ1	chr21	32623763	32733013
SYNJ2BP_chr14_70361499_70422090	0/1	t0001	6614	61	0	16	30	3	11	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0002	6614	41	6	5	23	1	6	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0003	6621	40	7	5	25	1	2	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	1/0	t0004	6620	36	2	11	20	1	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0005	6619	33	3	1	25	0	4	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0006	6622	11	8	0	3	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0007	6620	9	2	0	5	0	2	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0008	6619	8	0	2	6	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0009	6620	7	2	0	5	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0010	6620	7	5	1	0	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0011	6618	4	1	3	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0012	6608	4	2	2	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090