JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYNJ2BP_chr14_70361499_70422090	0/0	t0013	6609	4	4	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0014	6614	4	0	0	4	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0015	6614	4	1	2	0	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0016	6615	4	2	0	1	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0017	6613	4	0	1	3	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0018	6615	4	0	0	3	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0019	6615	4	1	2	0	1	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0020	6623	3	3	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0021	6620	3	0	2	0	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0022	6608	3	1	2	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0023	6614	3	3	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0024	6615	3	3	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0025	6618	2	2	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0026	6614	2	2	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0027	6613	2	2	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0028	6613	2	1	1	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0029	6614	2	0	0	2	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0030	6621	2	0	1	0	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0031	6620	2	2	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0032	6614	2	0	0	2	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0033	6620	2	0	0	2	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0034	6619	1	0	1	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0035	6621	1	0	0	1	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0036	6619	1	0	0	1	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0037	6619	1	0	0	0	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0038	6621	1	0	0	1	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0039	6621	1	0	0	0	1	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0040	6621	1	0	1	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0041	6621	1	0	0	0	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0042	6619	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0043	6619	1	0	0	0	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0044	6614	1	0	1	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0045	6620	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0046	6614	1	0	0	1	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0047	6619	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0048	6613	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0049	6614	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0050	6614	1	0	0	1	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0051	6614	1	0	0	1	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0052	6615	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0053	6616	1	0	0	1	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0054	6616	1	0	0	0	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0055	6619	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0056	6620	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0057	6614	1	0	0	1	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0058	6615	1	0	0	0	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0059	6616	1	0	1	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0060	6620	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0061	6615	1	0	1	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0062	6615	1	0	0	1	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090