JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYNJ2BP_chr14_70361499_70422090	0/0	t0063	6620	1	0	0	0	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0064	6620	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0065	6620	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0066	6622	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0067	6620	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0068	6622	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0069	6620	1	0	0	0	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0070	6620	1	0	0	0	0	1	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0071	6620	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0072	6615	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0073	6616	1	1	0	0	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0074	6619	1	0	0	1	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2BP_chr14_70361499_70422090	0/0	t0075	6618	1	0	0	1	0	0	copy fasta	SYNJ2BP	chr14	70361499	70422090
SYNJ2_chr6_157976863_158104176	0/1	t0001	2913	81	23	10	39	2	6	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0002	2915	70	19	14	24	4	9	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0003	2912	59	10	10	36	0	3	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0004	2912	18	0	8	0	2	8	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0005	2914	16	7	1	0	3	5	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0006	2912	9	8	1	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0007	2915	7	3	2	0	0	2	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	1/0	t0008	2912	7	0	5	0	0	1	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0009	2913	6	0	0	6	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0010	2912	5	5	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0011	2912	4	1	1	0	1	1	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0012	2912	3	0	0	3	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0013	2910	3	0	0	1	2	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0014	2913	3	0	0	3	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0015	2914	2	0	0	2	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0016	2912	2	2	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0017	2916	2	0	2	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0018	2913	2	0	0	2	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0019	2912	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0020	2912	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0021	2913	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0022	2912	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0023	2912	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0024	2912	1	0	0	0	0	1	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0025	2960	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0026	2913	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0027	2913	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0028	2914	1	1	0	0	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0029	2913	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0030	2913	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNJ2_chr6_157976863_158104176	0/0	t0031	2915	1	0	0	1	0	0	copy fasta	SYNJ2	chr6	157976863	158104176
SYNM_chr15_99100080_99140593	0/0	t0001	2656	140	34	26	53	6	21	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	1/0	t0002	2656	71	5	13	39	3	10	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0003	2656	64	2	4	51	2	5	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/1	t0004	2673	26	7	8	7	1	2	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0005	2673	22	4	4	12	0	2	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0006	2673	13	0	3	8	1	1	copy fasta	SYNM	chr15	99100080	99140593