JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYNM_chr15_99100080_99140593	0/0	t0007	2673	13	11	2	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0008	2673	11	10	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0009	2656	7	0	0	7	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0010	2656	6	6	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0011	2673	5	5	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0012	2656	4	0	0	4	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0013	2656	4	0	0	4	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0014	2656	3	0	2	0	0	1	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0015	2656	3	2	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0016	2656	3	3	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0017	2673	3	3	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0018	2673	3	0	1	0	0	2	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0019	2673	2	2	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0020	2673	2	0	2	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0021	2673	2	2	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0022	2656	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0023	2656	1	0	0	0	0	1	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0024	2673	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0025	2656	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0026	2656	1	0	1	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0027	2656	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0028	2656	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0029	2656	1	0	0	0	1	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0030	2660	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0031	2673	1	1	0	0	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0032	2656	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0033	2656	1	0	0	1	0	0	copy fasta	SYNM	chr15	99100080	99140593
SYNM_chr15_99100080_99140593	0/0	t0034	2673	1	0	0	0	0	1	copy fasta	SYNM	chr15	99100080	99140593
SYNPO2L_chr10_73639886_73661029	0/1	t0001	1942	105	19	24	45	4	12	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0002	1944	92	16	13	47	3	13	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0003	1936	45	0	1	43	0	1	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0004	1938	20	9	4	5	0	2	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	1/0	t0005	1940	20	6	5	6	0	2	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0006	1938	19	11	2	2	0	4	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0007	1936	16	14	2	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0008	1946	13	2	1	7	0	3	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0009	1938	8	0	0	8	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0010	1934	5	4	1	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0011	1940	3	1	0	0	0	2	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0012	1930	3	0	0	0	2	1	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0013	1944	3	3	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0014	1934	2	1	1	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0015	1934	2	2	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0016	1940	2	1	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0017	1942	2	0	0	2	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0018	1942	2	2	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0019	1934	1	1	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0020	1938	1	1	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0021	1940	1	0	1	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0022	1940	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029