JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYNPO2L_chr10_73639886_73661029	0/0	t0023	1892	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0024	1944	1	0	0	0	0	1	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0025	1916	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0026	1934	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0027	1940	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0028	1940	1	1	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0029	1940	1	0	1	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0030	1942	1	1	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0031	1942	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0032	1942	1	0	0	0	1	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0033	1942	1	1	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0034	1942	1	1	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0035	1944	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0036	1944	1	1	0	0	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0037	1944	1	0	0	1	0	0	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2L_chr10_73639886_73661029	0/0	t0038	1942	1	0	0	0	0	1	copy fasta	SYNPO2L	chr10	73639886	73661029
SYNPO2_chr4_118883854_119066247	0/0	t0001	3496	107	16	23	54	3	11	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/1	t0002	3497	30	0	4	24	0	1	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0003	3485	21	5	0	14	0	2	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0004	3489	20	1	7	9	1	2	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0005	3485	19	1	7	3	0	8	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0006	3473	10	5	5	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0007	3485	8	7	1	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0008	3495	6	2	1	1	0	2	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0009	3496	5	4	1	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	1/0	t0010	3497	5	4	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0011	3486	5	5	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0012	3495	4	2	2	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0013	3496	4	4	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0014	3497	4	4	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0015	3497	4	0	2	1	1	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0016	3498	3	0	0	3	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0017	3484	3	0	0	0	0	3	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0018	3473	3	3	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0019	3473	3	2	0	0	0	1	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0020	3487	3	3	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0021	3486	3	3	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0022	3496	2	0	0	2	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0023	3496	2	0	1	0	0	1	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0024	3497	2	2	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0025	3497	2	2	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0026	3498	2	1	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0027	3489	2	1	1	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0028	3485	2	0	1	0	1	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0029	3485	2	2	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0030	3496	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0031	3497	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0032	3486	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0033	3497	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0034	3497	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247