JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYNPO2_chr4_118883854_119066247	0/0	t0035	3484	1	0	0	0	0	1	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0036	3495	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0037	3496	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0038	3497	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0039	3497	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0040	3498	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0041	3495	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0042	3499	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0043	3500	1	0	1	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0044	3473	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0045	3471	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0046	3485	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0047	3485	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0048	3486	1	1	0	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0049	3485	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0050	3496	1	0	1	0	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0051	3489	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0052	3508	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO2_chr4_118883854_119066247	0/0	t0053	3497	1	0	0	1	0	0	copy fasta	SYNPO2	chr4	118883854	119066247
SYNPO_chr5_150635660_150664207	0/0	t0001	2640	28	2	5	13	4	4	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0002	2646	23	4	3	11	2	3	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0003	2644	22	0	0	22	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/1	t0004	2638	22	12	3	2	0	4	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	1/0	t0005	2648	21	1	9	4	1	5	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0006	2640	21	0	1	19	0	1	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0007	2642	19	3	2	11	0	3	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0008	2640	12	0	2	10	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0009	2644	12	1	3	2	3	3	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0010	2638	12	5	5	2	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0011	2648	10	0	3	1	1	5	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0012	2642	9	0	0	9	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0013	2648	7	0	0	7	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0014	2636	7	0	0	7	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0015	2642	7	0	0	7	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0016	2646	6	0	0	6	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0017	2646	6	1	4	0	0	1	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0018	2640	6	2	1	2	0	1	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0019	2640	6	0	0	6	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0020	2648	6	6	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0021	2638	6	4	2	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0022	2638	5	0	0	5	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0023	2636	5	0	2	1	0	2	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0024	2640	4	4	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0025	2650	4	4	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0026	2652	3	1	1	0	0	1	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0027	2642	3	0	0	3	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0028	2640	3	0	0	3	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0029	2642	3	3	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0030	2634	3	2	0	0	0	1	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0031	2632	3	3	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207