JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYNPO_chr5_150635660_150664207	0/0	t0082	2652	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0083	2646	1	0	0	1	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0084	2650	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0085	2648	1	0	1	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0086	2640	1	0	1	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0087	2648	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0088	2648	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0089	2646	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0090	2644	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0091	2654	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0092	2652	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0093	2648	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0094	2640	1	1	0	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPO_chr5_150635660_150664207	0/0	t0095	2648	1	0	1	0	0	0	copy fasta	SYNPO	chr5	150635660	150664207
SYNPR_chr3_63273308_63621924	0/0	t0001	1670	82	31	16	24	2	9	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0002	1670	69	7	12	40	4	6	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0003	1670	45	19	7	12	0	7	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0004	1670	11	7	1	2	1	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0005	1670	8	8	0	0	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0006	1670	6	0	0	3	0	3	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0007	1670	6	3	1	0	1	1	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0008	1669	5	4	1	0	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0009	1670	4	2	1	0	0	1	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0010	1670	2	1	0	0	0	1	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0011	1670	1	1	0	0	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0012	1670	1	0	1	0	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0013	1669	1	1	0	0	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0014	1670	1	1	0	0	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0015	1670	1	1	0	0	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0016	1670	1	0	0	1	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0017	1670	1	1	0	0	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNPR_chr3_63273308_63621924	0/0	t0018	1670	1	1	0	0	0	0	copy fasta	SYNPR	chr3	63273308	63621924
SYNRG_chr17_37509807_37614418	0/0	t0001	4199	95	11	10	64	0	10	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0002	4199	75	7	32	25	3	8	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0003	4197	38	2	12	12	3	9	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/1	t0004	4200	27	3	4	14	3	2	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0005	4199	13	13	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0006	4199	12	0	0	12	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0007	4198	10	3	6	0	1	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0008	4199	7	7	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0009	4199	7	6	1	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0010	4199	6	6	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0011	4199	6	6	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0012	4199	5	0	0	5	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0013	4200	5	5	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0014	4199	4	0	1	0	2	1	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0015	4198	4	1	0	3	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0016	4198	3	0	1	1	0	1	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0017	4200	3	3	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0018	4200	2	0	0	0	0	2	copy fasta	SYNRG	chr17	37509807	37614418