JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYNRG_chr17_37509807_37614418	0/0	t0019	4198	2	2	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0020	4200	2	1	1	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0021	4199	2	0	0	0	0	2	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0022	4199	2	0	0	0	2	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0023	4199	1	1	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0024	4199	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0025	4200	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0026	4199	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0027	4199	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0028	4199	1	1	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0029	4198	1	1	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0030	4200	1	1	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0031	4198	1	1	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0032	4198	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0033	4198	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0034	4200	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0035	4199	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0036	4200	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0037	4199	1	1	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0038	4199	1	0	0	1	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0039	4198	1	0	0	0	0	1	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0040	4199	1	1	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYNRG_chr17_37509807_37614418	0/0	t0041	4199	1	1	0	0	0	0	copy fasta	SYNRG	chr17	37509807	37614418
SYPL1_chr7_106085505_106117312	1/1	t0001	1405	322	91	47	144	10	28	copy fasta	SYPL1	chr7	106085505	106117312
SYPL1_chr7_106085505_106117312	0/0	t0002	1405	72	0	15	41	4	12	copy fasta	SYPL1	chr7	106085505	106117312
SYPL1_chr7_106085505_106117312	0/0	t0003	1405	1	1	0	0	0	0	copy fasta	SYPL1	chr7	106085505	106117312
SYPL1_chr7_106085505_106117312	0/0	t0004	1466	1	0	0	1	0	0	copy fasta	SYPL1	chr7	106085505	106117312
SYPL1_chr7_106085505_106117312	0/0	t0005	1405	1	1	0	0	0	0	copy fasta	SYPL1	chr7	106085505	106117312
SYPL1_chr7_106085505_106117312	0/0	t0006	1405	1	1	0	0	0	0	copy fasta	SYPL1	chr7	106085505	106117312
SYPL2_chr1_109461546_109487134	0/1	t0001	2885	154	23	38	62	10	20	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0002	2885	58	35	9	0	8	6	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0003	2885	20	4	3	5	0	8	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0004	2885	15	15	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0005	2885	7	6	1	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0006	2885	6	5	1	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0007	2885	4	0	0	4	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0008	2885	4	4	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0009	2885	3	0	0	0	0	3	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0010	2885	3	1	0	0	0	2	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0011	2885	3	0	0	3	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0012	2885	2	0	0	0	0	2	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0013	2885	2	0	2	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0014	2885	2	0	0	2	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0015	2885	2	0	0	2	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	1/0	t0016	2885	1	0	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0017	2885	1	0	0	0	0	1	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0018	2885	1	1	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0019	2885	1	1	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0020	2885	1	0	1	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0021	2885	1	1	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134