JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYPL2_chr1_109461546_109487134	0/0	t0022	2885	1	0	1	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0023	2885	1	1	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYPL2_chr1_109461546_109487134	0/0	t0024	2885	1	1	0	0	0	0	copy fasta	SYPL2	chr1	109461546	109487134
SYP_chrX_49182815_49205193	1/1	t0001	1480	234	24	40	125	11	32	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0002	1480	42	35	7	0	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0003	1480	5	5	0	0	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0004	1480	3	3	0	0	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0005	1480	2	0	2	0	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0006	1480	2	2	0	0	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0007	1479	1	0	0	1	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0008	1482	1	0	0	1	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0009	1480	1	1	0	0	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0010	1480	1	0	0	1	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0011	1480	1	1	0	0	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0012	1480	1	0	0	0	0	1	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0013	1480	1	0	1	0	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0014	1480	1	1	0	0	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0015	1481	1	0	0	1	0	0	copy fasta	SYP	chrX	49182815	49205193
SYP_chrX_49182815_49205193	0/0	t0016	1480	1	0	0	0	0	1	copy fasta	SYP	chrX	49182815	49205193
SYS1_chr20_45358156_45374209	0/1	t0001	2258	100	16	20	47	5	11	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	t0002	2258	91	7	16	51	1	16	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	1/0	t0003	2258	91	5	19	58	3	5	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	t0004	2258	34	24	4	0	0	6	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	t0005	2258	30	26	4	0	0	0	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	t0006	2289	12	11	1	0	0	0	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	t0007	2258	8	0	0	8	0	0	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	t0008	2258	6	6	0	0	0	0	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	t0009	2258	5	0	0	5	0	0	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	t0010	2258	5	0	1	4	0	0	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	t0011	2258	1	0	1	0	0	0	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	t0012	2258	1	0	0	0	1	0	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	t0013	2258	1	0	0	1	0	0	copy fasta	SYS1	chr20	45358156	45374209
SYS1_chr20_45358156_45374209	0/0	t0014	2258	1	1	0	0	0	0	copy fasta	SYS1	chr20	45358156	45374209
SYT10_chr12_33369238_33444819	0/0	t0001	2890	80	17	14	45	0	4	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/1	t0002	2890	75	7	7	50	1	9	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	1/0	t0003	2890	40	5	15	14	2	3	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0004	2890	38	7	18	11	1	1	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0005	2890	29	18	6	0	2	3	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0006	2890	10	9	1	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0007	2890	5	4	1	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0008	2890	4	1	0	0	0	3	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0009	2890	4	4	0	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0010	2890	4	4	0	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0011	2890	4	1	1	0	0	2	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0012	2890	3	3	0	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0013	2890	2	1	1	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0014	2890	2	0	0	2	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0015	2890	2	1	0	0	0	1	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0016	2890	1	1	0	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0017	2890	1	1	0	0	0	0	copy fasta	SYT10	chr12	33369238	33444819