Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
BNC2_chr9_16404503_16875670	0/0	t0053	9504	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0054	9511	1	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0055	9457	1	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0056	9493	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0057	9493	1	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0058	9513	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0059	9536	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0060	9534	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0061	9538	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0062	9493	1	0	0	1	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0063	9499	1	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0064	9489	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0065	9489	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0066	9489	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0067	9489	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0068	9497	1	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0069	9495	1	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0070	9499	1	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0071	9509	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0072	9495	1	0	0	1	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0073	9491	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/1	t0074	9496	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0075	9500	1	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0076	9502	1	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0077	9519	1	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0078	9495	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0079	9497	1	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0080	9499	1	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0081	9501	1	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0082	9494	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0083	9496	1	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0084	9497	1	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0085	9495	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0086	9489	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0087	9497	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0088	9495	1	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0089	9495	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0090	9491	1	0	0	1	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0091	9490	1	0	0	1	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0092	9511	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0093	9499	1	0	0	1	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0094	9483	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0095	9495	1	0	0	1	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0096	9495	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0097	9495	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0098	9493	1	0	0	1	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0099	9509	1	1	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0100	9509	1	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0101	9495	1	0	0	1	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0102	9503	1	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670