JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT10_chr12_33369238_33444819	0/0	t0018	2890	1	0	0	1	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0019	2890	1	0	0	1	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0020	2890	1	1	0	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0021	2890	1	0	0	1	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0022	2890	1	0	0	0	0	1	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0023	2890	1	0	1	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0024	2890	1	1	0	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0025	2890	1	0	0	1	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0026	2890	1	0	0	1	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0027	2890	1	0	1	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0028	2890	1	0	0	1	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0029	2890	1	0	0	0	0	1	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0030	2890	1	0	1	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0031	2890	1	0	1	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0032	2890	1	1	0	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT10_chr12_33369238_33444819	0/0	t0033	2890	1	1	0	0	0	0	copy fasta	SYT10	chr12	33369238	33444819
SYT11_chr1_155854567_155890199	0/0	t0001	3887	103	10	18	60	6	9	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0002	3887	97	9	30	35	6	17	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/1	t0003	3887	38	28	3	3	2	1	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	1/0	t0004	3887	25	24	0	0	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0005	3887	17	14	0	1	0	2	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0006	3886	16	1	0	12	0	3	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0007	3887	5	0	2	3	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0008	3886	3	3	0	0	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0009	3887	2	2	0	0	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0010	3887	1	0	0	0	0	1	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0011	3887	1	1	0	0	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0012	3887	1	0	1	0	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0013	3887	1	0	1	0	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0014	3887	1	0	1	0	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0015	3887	1	0	0	0	0	1	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0016	3887	1	1	0	0	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT11_chr1_155854567_155890199	0/0	t0017	3887	1	1	0	0	0	0	copy fasta	SYT11	chr1	155854567	155890199
SYT12_chr11_67018134_67055863	0/1	t0001	2457	160	16	31	75	10	27	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	1/0	t0002	2457	89	45	5	37	0	1	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0003	2457	8	6	2	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0004	2457	8	1	1	3	1	2	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0005	2457	5	0	0	5	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0006	2457	4	0	3	0	1	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0007	2457	3	3	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0008	2457	3	3	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0009	2457	2	2	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0010	2457	2	2	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0011	2457	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0012	2457	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0013	2457	1	0	0	0	0	1	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0014	2457	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0015	2457	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0016	2457	1	0	0	1	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0017	2457	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863