JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT12_chr11_67018134_67055863	0/0	t0018	2457	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0019	2457	1	0	0	1	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0020	2457	1	0	0	0	0	1	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0021	2457	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT12_chr11_67018134_67055863	0/0	t0022	2457	1	1	0	0	0	0	copy fasta	SYT12	chr11	67018134	67055863
SYT13_chr11_45235302_45291341	1/0	t0001	3885	122	15	32	69	0	5	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0002	3886	100	27	16	42	4	11	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/1	t0003	3889	32	4	6	11	0	10	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0004	3888	17	3	2	4	2	6	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0005	3885	16	1	0	13	0	2	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0006	3885	16	0	0	16	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0007	3885	8	7	1	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0008	3885	6	5	1	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0009	3886	4	0	0	4	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0010	3885	4	2	2	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0011	3885	4	4	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0012	3886	4	0	0	4	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0013	3885	3	3	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0014	3886	2	2	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0015	3885	2	2	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0016	3885	2	2	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0017	3885	2	2	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0018	3885	1	0	1	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0019	3886	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0020	3885	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0021	3886	1	0	0	0	0	1	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0022	3886	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0023	3886	1	0	0	0	0	1	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0024	3888	1	0	0	1	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0025	3889	1	0	0	1	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0026	3885	1	0	1	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0027	3886	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0028	3888	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0029	3886	1	0	0	1	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0030	3885	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0031	3885	1	0	0	0	0	1	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0032	3885	1	0	0	1	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0033	3885	1	0	0	1	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0034	3885	1	0	0	0	0	1	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0035	3885	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0036	3886	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0037	3886	1	1	0	0	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0038	3886	1	0	0	1	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT13_chr11_45235302_45291341	0/0	t0039	3885	1	0	0	1	0	0	copy fasta	SYT13	chr11	45235302	45291341
SYT14_chr1_209933217_210176315	1/0	t0001	10322	26	2	6	10	2	5	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0002	10313	25	3	3	15	1	3	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0003	10318	19	0	10	9	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0004	10312	18	0	0	18	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0005	10323	18	3	3	10	0	2	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0006	10319	16	0	6	10	0	0	copy fasta	SYT14	chr1	209933217	210176315