JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT14_chr1_209933217_210176315	0/0	t0007	10316	14	0	0	12	0	2	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0008	10322	13	0	1	6	4	2	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0009	10313	12	0	3	8	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/1	t0010	10321	12	0	5	3	0	3	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0011	10314	11	0	3	8	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0012	10315	11	1	7	2	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0013	10317	9	9	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0014	10318	9	0	0	8	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0015	10314	8	1	2	4	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0016	10322	7	0	4	1	0	2	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0017	10313	6	0	0	6	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0018	10323	6	0	2	1	0	3	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0019	10315	5	0	0	5	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0020	10315	5	4	1	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0021	10312	4	0	1	3	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0022	10316	4	4	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0023	10316	4	4	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0024	10317	4	4	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0025	10322	3	2	1	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0026	10320	3	0	2	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0027	10320	3	0	0	0	3	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0028	10307	3	2	1	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0029	10316	3	3	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0030	10314	3	0	0	3	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0031	10319	3	3	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0032	10319	3	0	0	2	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0033	10312	2	0	0	2	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0034	10313	2	0	2	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0035	10320	2	2	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0036	10320	2	1	1	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0037	10316	2	2	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0038	10324	2	1	1	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0039	10306	2	2	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0040	10315	2	2	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0041	10309	2	2	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0042	10323	2	2	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0043	10314	1	0	0	0	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0044	10313	1	0	1	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0045	10312	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0046	10314	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0047	10314	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0048	10316	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0049	10314	1	0	1	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0050	10315	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0051	10315	1	1	0	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0052	10316	1	0	0	0	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0053	10314	1	0	0	0	0	1	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0054	10313	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0055	10313	1	0	1	0	0	0	copy fasta	SYT14	chr1	209933217	210176315
SYT14_chr1_209933217_210176315	0/0	t0056	10315	1	0	0	1	0	0	copy fasta	SYT14	chr1	209933217	210176315