JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT15_chr10_46574128_46597064	0/0	t0006	4462	9	7	2	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0007	4462	6	0	0	6	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0008	4462	5	3	0	2	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0009	4453	5	3	2	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0010	4462	3	0	0	3	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0011	4453	3	2	1	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0012	4453	3	2	1	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0013	4462	2	0	0	2	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0014	4458	2	2	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0015	4462	2	2	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0016	4459	2	2	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0017	4461	2	2	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0018	4462	2	0	0	2	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0019	4462	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0020	4453	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0021	4458	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0022	4462	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0023	4461	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0024	4461	1	0	1	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0025	4462	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0026	4458	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0027	4461	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0028	4462	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0029	4462	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0030	4462	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0031	4462	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0032	4462	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0033	4458	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0034	4462	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0035	4462	1	0	0	1	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0036	4460	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0037	4453	1	0	1	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0038	4453	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0039	4457	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0040	4458	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0041	4462	1	0	0	0	0	1	copy fasta	SYT15	chr10	46574128	46597064
SYT15_chr10_46574128_46597064	0/0	t0042	4460	1	1	0	0	0	0	copy fasta	SYT15	chr10	46574128	46597064
SYT16_chr14_61807703_62117550	0/0	t0001	12276	18	4	6	7	1	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0002	12278	14	0	3	4	1	6	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0003	12276	14	13	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	1/0	t0004	12276	14	1	6	4	0	2	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0005	12275	12	11	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0006	12272	7	3	2	1	0	1	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0007	12278	7	0	3	1	2	1	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0008	12272	6	0	2	2	2	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0009	12276	5	0	0	3	0	2	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0010	12272	4	4	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0011	12276	3	0	0	2	0	1	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0012	12275	3	2	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0013	12277	3	3	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550