JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT16_chr14_61807703_62117550	0/0	t0014	12275	3	2	0	0	0	1	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0015	12272	2	0	2	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0016	12276	2	0	0	2	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0017	12278	2	2	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/1	t0018	12274	2	0	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0019	12275	2	2	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0020	12277	2	2	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0021	12280	2	0	1	0	1	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0022	12276	2	0	2	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0023	12276	2	1	0	0	0	1	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0024	12253	1	0	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0025	12272	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0026	12273	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0027	12272	1	0	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0028	12272	1	0	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0029	12276	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0030	12276	1	0	0	1	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0031	12280	1	0	0	0	0	1	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0032	12272	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0033	12276	1	0	0	1	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0034	12272	1	0	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0035	12278	1	0	0	0	1	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0036	12272	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0037	12272	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0038	12276	1	0	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0039	12272	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0040	12276	1	0	0	0	0	1	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0041	12278	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0042	12278	1	0	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0043	12272	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0044	12276	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0045	12276	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0046	12276	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0047	12273	1	0	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0048	12277	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0049	12277	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0050	12272	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0051	12272	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0052	12272	1	0	0	1	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0053	12276	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0054	12272	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0055	12276	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0056	12276	1	0	0	1	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0057	12272	1	0	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0058	12280	1	0	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0059	12276	1	0	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0060	12272	1	0	1	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0061	12276	1	0	0	0	0	1	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0062	12272	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0063	12278	1	0	0	1	0	0	copy fasta	SYT16	chr14	61807703	62117550