JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT16_chr14_61807703_62117550	0/0	t0064	12278	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0065	12272	1	1	0	0	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT16_chr14_61807703_62117550	0/0	t0066	12272	1	0	0	1	0	0	copy fasta	SYT16	chr14	61807703	62117550
SYT17_chr16_19163240_19273332	0/1	t0001	1649	111	4	13	72	5	16	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	1/0	t0002	1664	23	3	8	0	3	8	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0003	1651	21	1	12	3	2	3	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0004	1653	15	0	1	11	1	2	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0005	1648	14	8	0	2	3	1	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0006	1650	12	3	4	2	0	3	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0007	1649	10	0	3	7	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0008	1645	8	1	6	0	1	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0009	1662	6	5	1	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0010	1648	6	6	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0011	1655	5	0	3	1	1	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0012	1656	5	5	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0013	1660	4	1	1	0	2	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0014	1650	4	4	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0015	1647	3	0	0	3	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0016	1654	3	3	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0017	1662	3	3	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0018	1651	2	0	0	2	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0019	1664	2	2	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0020	1665	2	0	2	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0021	1666	2	0	2	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0022	1655	2	2	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0023	1649	2	2	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0024	1664	2	2	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0025	1649	2	2	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0026	1649	2	1	0	0	0	1	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0027	1651	2	0	2	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0028	1648	2	2	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0029	1662	2	2	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0030	1656	2	2	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0031	1662	2	2	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0032	1655	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0033	1650	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0034	1652	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0035	1649	1	0	0	1	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0036	1645	1	0	1	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0037	1649	1	0	0	1	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0038	1653	1	0	0	1	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0039	1654	1	0	0	1	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0040	1647	1	0	0	0	0	1	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0041	1650	1	0	0	1	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0042	1652	1	0	0	1	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0043	1654	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0044	1662	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0045	1647	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0046	1646	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0047	1658	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332