JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT17_chr16_19163240_19273332	0/0	t0048	1646	1	0	0	1	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0049	1650	1	0	1	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0050	1663	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0051	1661	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0052	1663	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0053	1664	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0054	1651	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0055	1650	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0056	1647	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0057	1660	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0058	1657	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0059	1650	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0060	1662	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0061	1652	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0062	1654	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0063	1658	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0064	1662	1	0	1	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0065	1664	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0066	1650	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0067	1651	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0068	1647	1	0	0	0	0	1	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0069	1653	1	0	1	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0070	1652	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0071	1654	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0072	1645	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0073	1664	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT17_chr16_19163240_19273332	0/0	t0074	1666	1	1	0	0	0	0	copy fasta	SYT17	chr16	19163240	19273332
SYT1_chr12_78859774_79457008	0/1	t0001	3435	15	2	6	5	0	1	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0002	3433	6	5	1	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0003	3447	6	2	3	1	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0004	3425	4	1	0	3	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0005	3435	4	4	0	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0006	3431	3	3	0	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0007	3437	3	3	0	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0008	3445	3	3	0	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0009	3449	3	1	1	1	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0010	3433	2	2	0	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0011	3435	2	0	2	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0012	3439	2	2	0	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	1/0	t0013	3437	1	0	0	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0014	3435	1	1	0	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0015	3435	1	0	0	0	0	1	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0016	3435	1	0	0	1	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0017	3435	1	1	0	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0018	3437	1	0	1	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0019	3437	1	1	0	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0020	3437	1	1	0	0	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT1_chr12_78859774_79457008	0/0	t0021	3435	1	0	0	1	0	0	copy fasta	SYT1	chr12	78859774	79457008
SYT2_chr1_202585596_202715454	0/0	t0001	6376	21	0	4	17	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0002	6384	12	1	5	2	1	3	copy fasta	SYT2	chr1	202585596	202715454