Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BNC2_chr9_16404503_16875670	0/0	t0103	9511	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0104	9504	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0105	9506	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0106	9507	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0107	9513	1	1	0	0	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0108	9496	1	0	0	0	0	1	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0109	9501	1	0	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNC2_chr9_16404503_16875670	0/0	t0110	9497	1	0	0	1	0	0	copy fasta	BNC2	chr9	16404503	16875670
BNIP1_chr5_173139531_173169387	1/1	t0001	482	320	88	54	125	16	35	copy fasta	BNIP1	chr5	173139531	173169387
BNIP1_chr5_173139531_173169387	0/0	t0002	482	23	2	12	2	2	5	copy fasta	BNIP1	chr5	173139531	173169387
BNIP1_chr5_173139531_173169387	0/0	t0003	482	3	3	0	0	0	0	copy fasta	BNIP1	chr5	173139531	173169387
BNIP1_chr5_173139531_173169387	0/0	t0004	482	2	1	1	0	0	0	copy fasta	BNIP1	chr5	173139531	173169387
BNIP1_chr5_173139531_173169387	0/0	t0005	482	1	0	0	0	0	1	copy fasta	BNIP1	chr5	173139531	173169387
BNIP1_chr5_173139531_173169387	0/0	t0006	482	1	0	0	1	0	0	copy fasta	BNIP1	chr5	173139531	173169387
BNIP1_chr5_173139531_173169387	0/0	t0007	482	1	0	1	0	0	0	copy fasta	BNIP1	chr5	173139531	173169387
BNIP1_chr5_173139531_173169387	0/0	t0008	520	1	0	0	0	0	1	copy fasta	BNIP1	chr5	173139531	173169387
BNIP2_chr15_59654146_59694320	0/1	t0001	5176	127	14	21	74	5	12	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0002	5178	58	7	1	36	1	13	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0003	5176	57	23	14	13	4	3	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0004	5176	46	7	18	11	2	8	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0005	5177	13	12	0	0	0	1	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0006	5177	9	0	4	4	0	1	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0007	5176	7	0	0	7	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0008	5176	5	0	5	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0009	5177	4	1	1	0	0	2	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0010	5176	4	0	2	1	0	1	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0011	5176	4	4	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0012	5175	3	0	0	3	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0013	5178	3	0	0	3	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0014	5178	3	0	0	3	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0015	5178	3	3	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0016	5179	3	3	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0017	5176	2	0	1	0	1	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0018	5176	2	2	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0019	5176	2	0	1	0	1	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0020	5176	2	0	0	2	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0021	5175	2	2	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0022	5176	2	2	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0023	5168	2	0	0	2	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0024	5176	2	0	2	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0025	5177	2	0	1	1	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0026	5176	2	2	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	1/0	t0027	5167	2	1	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0028	5178	2	0	0	2	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0029	5176	2	0	0	2	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0030	5170	2	0	0	2	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0031	5176	2	2	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0032	5176	1	0	1	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0033	5177	1	0	0	0	0	1	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0034	5176	1	0	0	0	0	1	copy fasta	BNIP2	chr15	59654146	59694320