JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT2_chr1_202585596_202715454	0/0	t0003	6382	11	0	6	2	0	3	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0004	6380	8	0	0	6	0	2	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0005	6384	7	0	1	6	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0006	6378	7	0	0	1	2	4	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0007	6360	7	6	1	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0008	6386	6	0	3	3	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0009	6378	6	0	0	6	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0010	6384	5	4	0	0	0	1	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0011	6386	5	1	1	2	0	1	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0012	6388	5	0	3	1	1	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0013	6376	5	0	3	1	1	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0014	6362	5	5	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	1/0	t0015	6376	4	3	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0016	6386	4	0	0	4	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0017	6386	4	4	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0018	6382	3	0	1	1	0	1	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0019	6384	3	3	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0020	6386	3	0	3	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0021	6386	3	0	3	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0022	6374	3	0	1	0	2	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0023	6378	3	1	0	0	1	1	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0024	6380	3	0	1	1	1	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0025	6382	3	0	2	1	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0026	6382	3	0	0	2	1	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0027	6384	3	0	1	2	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0028	6386	3	0	2	0	1	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0029	6376	3	2	1	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0030	6376	3	1	0	2	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0031	6360	3	3	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0032	6378	3	0	2	0	1	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0033	6388	3	3	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0034	6366	2	2	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0035	6386	2	2	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0036	6388	2	0	0	2	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0037	6388	2	0	0	2	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0038	6356	2	2	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0039	6358	2	2	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0040	6376	2	0	0	2	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0041	6377	2	0	2	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0042	6384	2	0	2	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0043	6384	2	0	0	1	0	1	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0044	6394	2	0	1	1	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0045	6378	2	0	0	1	0	1	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0046	6382	2	0	0	2	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0047	6388	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0048	6386	1	0	0	1	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0049	6396	1	0	0	1	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0050	6382	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0051	6382	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0052	6396	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454