JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT2_chr1_202585596_202715454	0/0	t0103	6360	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0104	6360	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0105	6360	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0106	6362	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0107	6362	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0108	6362	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0109	6362	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0110	6364	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0111	6368	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0112	6376	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0113	6386	1	0	0	0	0	1	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0114	6388	1	0	0	0	0	1	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0115	6378	1	0	0	1	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0116	6374	1	0	1	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0117	6366	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0118	6378	1	0	0	1	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0119	6380	1	0	0	0	0	1	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0120	6380	1	0	0	1	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0121	6384	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0122	6380	1	0	0	1	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0123	6386	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0124	6380	1	0	1	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0125	6374	1	0	0	0	0	1	copy fasta	SYT2	chr1	202585596	202715454
SYT2_chr1_202585596_202715454	0/0	t0126	6356	1	1	0	0	0	0	copy fasta	SYT2	chr1	202585596	202715454
SYT3_chr19_50616977_50644881	0/0	t0001	744	220	78	57	51	13	21	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	t0002	753	100	1	11	72	0	16	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/1	t0003	744	42	4	7	21	2	7	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	t0004	744	11	10	0	0	0	1	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	t0005	744	3	3	0	0	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	t0006	744	2	0	2	0	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	t0007	744	2	1	0	0	1	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	t0008	753	1	0	0	0	0	1	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	1/0	t0009	754	1	0	0	0	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	t0010	753	1	0	0	1	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	t0011	744	1	1	0	0	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	t0012	744	1	0	0	0	0	1	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	t0013	744	1	0	0	0	0	1	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	t0014	744	1	0	1	0	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT3_chr19_50616977_50644881	0/0	t0015	744	1	0	0	1	0	0	copy fasta	SYT3	chr19	50616977	50644881
SYT4_chr18_43262892_43282490	0/0	t0001	2658	267	59	34	139	6	29	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0002	2658	98	1	13	78	1	5	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/1	t0003	2658	43	15	16	0	4	7	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0004	2659	8	8	0	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0005	2659	4	4	0	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0006	2658	4	0	4	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0007	2658	3	0	2	0	1	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0008	2658	2	1	1	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0009	2658	2	1	1	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0010	2658	2	2	0	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0011	2658	2	2	0	0	0	0	copy fasta	SYT4	chr18	43262892	43282490