JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT4_chr18_43262892_43282490	1/0	t0012	2659	2	0	0	0	0	1	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0013	2658	1	0	0	1	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0014	2658	1	0	0	0	0	1	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0015	2658	1	0	0	0	0	1	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0016	2658	1	0	0	1	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0017	2658	1	0	0	1	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0018	2659	1	1	0	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0019	2658	1	0	1	0	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0020	2658	1	0	0	1	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT4_chr18_43262892_43282490	0/0	t0021	2658	1	0	0	1	0	0	copy fasta	SYT4	chr18	43262892	43282490
SYT5_chr19_55166196_55185289	1/1	t0001	2507	78	3	13	47	6	7	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0002	2502	59	5	15	37	0	2	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0003	2505	30	6	0	15	1	8	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0004	2493	15	8	3	0	1	3	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0005	2509	14	0	0	10	0	4	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0006	2505	12	0	2	7	1	2	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0007	2495	10	8	1	1	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0008	2505	9	0	0	9	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0009	2491	9	9	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0010	2498	8	0	8	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0011	2493	7	0	1	4	0	2	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0012	2507	7	1	3	0	1	2	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0013	2504	6	0	0	3	0	3	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0014	2507	6	0	0	6	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0015	2507	5	0	2	3	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0016	2508	5	0	0	5	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0017	2491	5	0	3	1	0	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0018	2507	5	1	3	0	0	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0019	2502	5	0	4	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0020	2507	4	0	0	4	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0021	2505	4	0	0	3	0	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0022	2504	4	0	0	4	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0023	2499	4	3	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0024	2507	3	0	0	0	0	3	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0025	2501	3	0	0	2	0	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0026	2511	3	0	0	3	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0027	2491	3	1	0	0	1	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0028	2505	3	2	0	0	0	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0029	2492	3	2	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0030	2495	3	2	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0031	2497	3	3	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0032	2504	3	3	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0033	2500	2	0	0	1	0	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0034	2499	2	2	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0035	2503	2	0	0	1	0	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0036	2489	2	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0037	2507	2	0	0	2	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0038	2493	2	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0039	2491	2	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0040	2496	2	2	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289