JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SYT5_chr19_55166196_55185289	0/0	t0041	2509	2	1	1	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0042	2498	2	1	1	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0043	2497	2	2	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0044	2499	2	2	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0045	2493	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0046	2495	1	0	0	0	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0047	2495	1	0	0	0	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0048	2499	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0049	2509	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0050	2508	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0051	2505	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0052	2502	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0053	2498	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0054	2508	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0055	2502	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0056	2501	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0057	2499	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0058	2499	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0059	2499	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0060	2501	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0061	2499	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0062	2502	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0063	2502	1	0	1	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0064	2509	1	0	0	0	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0065	2511	1	0	1	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0066	2507	1	0	1	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0067	2503	1	0	0	0	1	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0068	2505	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0069	2507	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0070	2509	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0071	2510	1	0	1	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0072	2494	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0073	2509	1	0	1	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0074	2509	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0075	2497	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0076	2489	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0077	2503	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0078	2506	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0079	2497	1	0	1	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0080	2499	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0081	2500	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0082	2502	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0083	2500	1	0	1	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0084	2495	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0085	2497	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0086	2495	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0087	2495	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0088	2507	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0089	2507	1	0	0	1	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0090	2497	1	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289