JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT5_chr19_55166196_55185289	0/0	t0091	2503	1	1	0	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT5_chr19_55166196_55185289	0/0	t0092	2507	1	0	1	0	0	0	copy fasta	SYT5	chr19	55166196	55185289
SYT6_chr1_114084292_114158869	0/1	t0001	2941	142	10	21	93	5	12	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0002	2941	76	2	4	59	1	10	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0003	2941	26	19	2	1	1	3	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0004	2941	25	2	10	5	0	8	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0005	2942	21	0	10	11	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	1/0	t0006	2940	19	0	6	8	1	3	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0007	2941	16	5	7	0	1	3	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0008	2941	13	0	2	11	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0009	2941	13	12	1	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0010	2941	11	10	1	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0011	2941	11	11	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0012	2940	6	0	6	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0013	2941	5	5	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0014	2941	3	2	1	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0015	2941	3	3	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0016	2941	3	0	0	3	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0017	2940	3	0	0	3	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0018	2941	3	3	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0019	2941	2	2	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0020	2941	2	0	1	0	0	1	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0021	2941	1	0	1	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0022	2941	1	0	0	0	0	1	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0023	2941	1	1	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0024	2941	1	0	0	0	0	1	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0025	2941	1	1	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0026	2941	1	1	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0027	2941	1	1	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0028	2942	1	0	1	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0029	2941	1	1	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0030	2941	1	0	0	1	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0031	2941	1	0	0	0	0	1	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0032	2941	1	1	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0033	2941	1	0	0	0	0	1	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0034	2941	1	0	0	0	1	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0035	2941	1	1	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0036	2941	1	1	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0037	2941	1	1	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0038	2941	1	1	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0039	2941	1	0	0	0	0	1	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0040	2941	1	0	0	1	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0041	2941	1	1	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0042	2941	1	0	0	0	0	1	copy fasta	SYT6	chr1	114084292	114158869
SYT6_chr1_114084292_114158869	0/0	t0043	2941	1	1	0	0	0	0	copy fasta	SYT6	chr1	114084292	114158869
SYT7_chr11_61508714_61586076	0/0	t0001	5170	50	11	16	13	1	9	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0002	5171	26	2	6	12	2	4	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0003	5172	7	0	0	7	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	1/0	t0004	5170	6	3	0	1	0	1	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0005	5170	6	6	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076