JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT7_chr11_61508714_61586076	0/0	t0006	5170	5	5	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0007	5169	5	5	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0008	5171	5	5	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0009	5169	4	3	1	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0010	5170	4	4	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0011	5168	4	4	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0012	5170	4	0	0	4	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0013	5170	3	3	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0014	5169	3	1	2	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0015	5171	3	3	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0016	5170	2	2	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0017	5171	2	2	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0018	5171	2	2	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0019	5171	2	0	1	0	1	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0020	5171	2	0	0	0	0	2	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0021	5168	2	2	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0022	5169	2	0	1	1	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0023	5171	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0024	5170	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0025	5170	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0026	5170	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0027	5170	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0028	5170	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0029	5169	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0030	5171	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0031	5171	1	0	0	0	0	1	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0032	5170	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0033	5171	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0034	5170	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0035	5170	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0036	5169	1	0	1	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0037	5169	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0038	5171	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0039	5170	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0040	5170	1	0	0	1	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0041	5171	1	0	0	1	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0042	5171	1	0	0	1	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0043	5171	1	0	0	0	0	1	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0044	5170	1	0	1	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/1	t0045	5170	1	0	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0046	5170	1	0	0	0	0	1	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0047	5170	1	0	1	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0048	5170	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0049	5170	1	0	0	1	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0050	5169	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0051	5171	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0052	5170	1	0	0	0	1	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0053	5169	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0054	5170	1	0	0	0	0	1	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0055	5170	1	0	0	1	0	0	copy fasta	SYT7	chr11	61508714	61586076