JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYT7_chr11_61508714_61586076	0/0	t0056	5170	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0057	5168	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0058	5171	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0059	5170	1	1	0	0	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0060	5170	1	0	0	0	1	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0061	5172	1	0	0	1	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0062	5172	1	0	0	1	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT7_chr11_61508714_61586076	0/0	t0063	5172	1	0	0	1	0	0	copy fasta	SYT7	chr11	61508714	61586076
SYT8_chr11_1829990_1842521	1/1	t0001	207	454	99	86	204	16	47	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	t0002	207	1	1	0	0	0	0	copy fasta	SYT8	chr11	1829990	1842521
SYT8_chr11_1829990_1842521	0/0	t0003	207	1	0	0	0	0	1	copy fasta	SYT8	chr11	1829990	1842521
SYT9_chr11_7246904_7474043	0/1	t0001	2527	58	14	20	12	3	8	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0002	2524	56	20	7	17	2	10	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0003	2527	53	12	8	19	5	9	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	1/0	t0004	2527	36	7	6	20	2	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0005	2527	28	5	1	22	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0006	2527	12	10	2	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0007	2527	6	5	1	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0008	2527	3	0	3	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0009	2527	3	3	0	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0010	2527	2	2	0	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0011	2524	1	0	0	0	0	1	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0012	2527	1	0	0	0	0	1	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0013	2527	1	1	0	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0014	2527	1	1	0	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0015	2527	1	1	0	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0016	2527	1	0	0	1	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0017	2527	1	0	0	0	0	1	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0018	2527	1	0	0	1	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0019	2524	1	1	0	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0020	2524	1	1	0	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0021	2527	1	0	0	1	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0022	2527	1	1	0	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0023	2527	1	0	0	1	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0024	2527	1	0	1	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYT9_chr11_7246904_7474043	0/0	t0025	2524	1	0	1	0	0	0	copy fasta	SYT9	chr11	7246904	7474043
SYTL1_chr1_27337022_27358932	1/1	t0001	248	374	94	72	152	16	38	copy fasta	SYTL1	chr1	27337022	27358932
SYTL1_chr1_27337022_27358932	0/0	t0002	248	4	0	2	0	2	0	copy fasta	SYTL1	chr1	27337022	27358932
SYTL2_chr11_85689229_85816141	0/1	t0001	1545	202	54	28	95	5	19	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	1/0	t0002	1544	125	35	18	54	5	12	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	t0003	1544	12	0	5	6	0	1	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	t0004	1545	11	0	5	3	1	2	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	t0005	1545	3	0	0	3	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	t0006	1545	2	0	0	0	2	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	t0007	1545	2	0	0	2	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	t0008	1545	2	0	0	0	0	2	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	t0009	1544	1	0	0	0	1	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	t0010	1545	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	t0011	1545	1	0	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	t0012	1544	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141