JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYTL2_chr11_85689229_85816141	0/0	t0013	1545	1	0	1	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	t0014	1544	1	1	0	0	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL2_chr11_85689229_85816141	0/0	t0015	1545	1	0	0	1	0	0	copy fasta	SYTL2	chr11	85689229	85816141
SYTL3_chr6_158645054_158769871	1/1	t0001	1019	266	78	66	68	8	44	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	t0002	1019	8	8	0	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	t0003	1019	4	0	0	4	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	t0004	1019	2	2	0	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	t0005	1019	2	0	0	2	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	t0006	1019	2	0	0	2	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	t0007	1019	2	1	0	0	0	1	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	t0008	1019	1	1	0	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	t0009	1019	1	0	0	0	0	1	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	t0010	1019	1	0	1	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	t0011	1019	1	1	0	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	t0012	1019	1	0	1	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL3_chr6_158645054_158769871	0/0	t0013	1019	1	1	0	0	0	0	copy fasta	SYTL3	chr6	158645054	158769871
SYTL4_chrX_100669491_100737121	0/1	t0001	1985	100	18	27	37	5	12	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0002	1991	69	0	14	45	1	9	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0003	1981	50	22	3	20	0	5	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0004	1987	8	3	2	1	0	2	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0005	1993	7	0	2	3	2	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0006	1989	6	4	2	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0007	1987	5	1	0	1	1	2	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0008	1985	5	4	0	0	1	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0009	1983	4	0	0	4	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0010	1983	3	3	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0011	1989	3	2	1	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0012	1975	3	3	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0013	1981	2	2	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	1/0	t0014	1983	2	1	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0015	1989	2	2	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0016	1985	1	0	0	1	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0017	1981	1	1	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0018	1977	1	1	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0019	1979	1	0	0	0	0	1	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0020	1985	1	1	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0021	1985	1	0	0	1	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0022	1985	1	0	0	1	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0023	1989	1	0	0	0	1	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0024	1993	1	0	0	1	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0025	1991	1	1	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0026	1977	1	1	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0027	1992	1	0	0	0	0	1	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0028	1991	1	0	0	1	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0029	1981	1	1	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0030	1989	1	1	0	0	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL4_chrX_100669491_100737121	0/0	t0031	1981	1	0	0	1	0	0	copy fasta	SYTL4	chrX	100669491	100737121
SYTL5_chrX_38001553_38133816	1/1	t0001	2559	78	2	18	45	5	6	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0002	2559	63	43	10	6	0	4	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0003	2559	44	1	3	27	2	11	copy fasta	SYTL5	chrX	38001553	38133816