JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SYTL5_chrX_38001553_38133816	0/0	t0004	2559	30	9	9	4	0	8	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0005	2559	7	0	0	7	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0006	2559	5	4	0	0	0	1	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0007	2559	3	3	0	0	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0008	2559	2	0	2	0	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0009	2559	2	0	0	2	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0010	2559	2	2	0	0	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0011	2559	2	0	0	2	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0012	2559	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0013	2559	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0014	2559	1	0	0	0	0	1	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0015	2559	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0016	2559	1	0	0	1	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0017	2559	1	1	0	0	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0018	2559	1	0	1	0	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0019	2559	1	0	1	0	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0020	2559	1	0	0	0	0	1	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0021	2559	1	1	0	0	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0022	2559	1	1	0	0	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYTL5_chrX_38001553_38133816	0/0	t0023	2559	1	1	0	0	0	0	copy fasta	SYTL5	chrX	38001553	38133816
SYVN1_chr11_65122279_65139519	0/1	t0001	1185	322	49	62	161	17	32	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	1/0	t0002	1185	66	30	7	15	1	12	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	t0003	1185	10	8	2	0	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	t0004	1185	6	5	1	0	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	t0005	1185	2	2	0	0	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	t0006	1185	2	2	0	0	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	t0007	1175	1	0	0	1	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	t0008	1185	1	1	0	0	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	t0009	1185	1	1	0	0	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SYVN1_chr11_65122279_65139519	0/0	t0010	1185	1	0	0	1	0	0	copy fasta	SYVN1	chr11	65122279	65139519
SZRD1_chr1_16362242_16403145	1/1	t0001	3022	147	42	36	43	5	19	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0002	3022	114	6	22	68	6	12	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0003	3023	11	11	0	0	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0004	3022	10	1	2	7	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0005	3023	8	1	5	0	1	1	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0006	3022	5	5	0	0	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0007	3022	4	4	0	0	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0008	3022	4	4	0	0	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0009	3024	4	4	0	0	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0010	3022	3	3	0	0	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0011	3022	3	0	0	3	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0012	3022	1	0	0	1	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0013	3023	1	1	0	0	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0014	3024	1	1	0	0	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0015	3023	1	1	0	0	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0016	3024	1	1	0	0	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0017	3024	1	1	0	0	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZRD1_chr1_16362242_16403145	0/0	t0018	3022	1	0	1	0	0	0	copy fasta	SZRD1	chr1	16362242	16403145
SZT2_chr1_43384899_43459247	1/0	t0001	3838	78	9	14	40	3	11	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0002	3838	59	11	5	36	1	6	copy fasta	SZT2	chr1	43384899	43459247