Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BNIP2_chr15_59654146_59694320	0/0	t0035	5176	1	0	0	1	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0036	5176	1	0	0	0	0	1	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0037	5176	1	0	1	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0038	5170	1	0	0	1	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0039	5176	1	0	1	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0040	5175	1	1	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0041	5176	1	0	0	1	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0042	5176	1	0	0	1	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0043	5176	1	1	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0044	5177	1	1	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0045	5176	1	1	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0046	5176	1	0	0	1	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0047	5176	1	0	1	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0048	5177	1	1	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0049	5176	1	0	0	0	0	1	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0050	5179	1	1	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0051	5176	1	0	0	1	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0052	5168	1	0	1	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0053	5177	1	0	0	0	0	1	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0054	5176	1	0	0	1	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0055	5177	1	0	0	1	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0056	5178	1	1	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0057	5178	1	0	0	1	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0058	5178	1	0	0	1	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0059	5178	1	1	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0060	5179	1	0	0	1	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0061	5177	1	1	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0062	5176	1	0	0	1	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0063	5177	1	1	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP2_chr15_59654146_59694320	0/0	t0064	5179	1	1	0	0	0	0	copy fasta	BNIP2	chr15	59654146	59694320
BNIP3L_chr8_26378054_26418127	0/0	t0001	2793	105	18	14	67	0	6	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	1/0	t0002	2793	93	31	20	22	2	17	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0003	2793	76	23	6	41	0	6	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0004	2793	57	1	13	30	9	4	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0005	2793	15	14	1	0	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0006	2793	12	0	5	6	0	1	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/1	t0007	2793	11	1	5	0	2	2	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0008	2789	7	0	5	2	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0009	2792	6	0	5	1	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0010	2793	6	0	0	4	1	1	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0011	2793	3	0	0	1	0	2	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0012	2793	2	0	0	2	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0013	2793	1	0	0	1	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0014	2793	1	1	0	0	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0015	2793	1	0	0	0	0	1	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0016	2793	1	0	1	0	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0017	2789	1	0	0	1	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0018	2789	1	0	0	0	0	1	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0019	2793	1	0	0	1	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0020	2793	1	1	0	0	0	0	copy fasta	BNIP3L	chr8	26378054	26418127