JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SZT2_chr1_43384899_43459247	0/0	t0003	3838	37	11	15	6	3	2	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0004	3838	18	16	2	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0005	3838	10	0	0	10	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0006	3838	8	2	5	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/1	t0007	3838	7	2	1	0	0	3	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0008	3838	6	6	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0009	3838	6	6	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0010	3845	6	0	0	4	0	2	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0011	3838	5	2	1	0	0	2	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0012	3852	5	5	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0013	3838	4	3	1	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0014	3838	3	0	2	0	1	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0015	3838	3	3	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0016	3838	3	0	0	3	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0017	3838	3	0	0	3	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0018	3838	2	0	2	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0019	3831	2	0	0	2	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0020	3838	2	2	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0021	3838	2	0	0	2	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0022	3838	2	2	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0023	3838	1	0	0	0	0	1	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0024	3838	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0025	3845	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0026	3838	1	0	0	0	0	1	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0027	3838	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0028	3845	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0029	3838	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0030	3831	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0031	3845	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0032	3845	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0033	3838	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0034	3845	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0035	3838	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0036	3859	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0037	3838	1	0	1	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0038	3838	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0039	3831	1	1	0	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0040	3838	1	0	1	0	0	0	copy fasta	SZT2	chr1	43384899	43459247
SZT2_chr1_43384899_43459247	0/0	t0041	3838	1	0	0	1	0	0	copy fasta	SZT2	chr1	43384899	43459247
TAAR1_chr6_132638312_132664182	0/0	t0001	1852	109	50	4	50	0	5	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0002	1852	86	0	19	60	2	5	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	1/0	t0003	1852	74	7	28	23	2	13	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/1	t0004	1852	33	6	7	9	2	8	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0005	1851	33	3	4	22	2	2	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0006	1852	29	7	10	7	3	2	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0007	1852	24	3	3	18	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0008	1852	7	0	0	7	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0009	1852	4	4	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0010	1852	4	0	4	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0011	1851	3	0	0	3	0	0	copy fasta	TAAR1	chr6	132638312	132664182