JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAAR1_chr6_132638312_132664182	0/0	t0012	1852	3	1	1	1	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0013	1852	3	3	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0014	1852	2	0	0	0	2	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0015	1852	2	2	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0016	1852	2	2	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0017	1852	2	0	0	2	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0018	1852	1	0	1	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0019	1852	1	0	0	1	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0020	1852	1	0	0	1	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0021	1852	1	0	0	1	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0022	1852	1	1	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0023	1852	1	1	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0024	1851	1	0	0	1	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0025	1851	1	1	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0026	1852	1	1	0	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0027	1852	1	0	0	1	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0028	1851	1	0	0	1	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0029	1852	1	0	0	0	1	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0030	1852	1	0	0	1	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0031	1851	1	0	0	1	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0032	1852	1	0	1	0	0	0	copy fasta	TAAR1	chr6	132638312	132664182
TAAR1_chr6_132638312_132664182	0/0	t0033	1852	1	0	0	0	0	1	copy fasta	TAAR1	chr6	132638312	132664182
TAAR5_chr6_132583592_132594741	1/1	t0001	137	443	91	82	212	16	40	copy fasta	TAAR5	chr6	132583592	132594741
TAAR5_chr6_132583592_132594741	0/0	t0002	137	1	1	0	0	0	0	copy fasta	TAAR5	chr6	132583592	132594741
TAAR8_chr6_132547672_132558756	1/1	t0001	57	436	94	84	196	16	44	copy fasta	TAAR8	chr6	132547672	132558756
TAAR9_chr6_132533277_132544336	1/1	t0001	14	428	98	78	198	12	40	copy fasta	TAAR9	chr6	132533277	132544336
TAAR9_chr6_132533277_132544336	0/0	t0002	14	2	0	0	2	0	0	copy fasta	TAAR9	chr6	132533277	132544336
TAB1_chr22_39394780_39436882	0/1	t0001	1684	241	62	46	89	10	33	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	1/0	t0002	1684	34	5	15	0	4	9	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	t0003	1684	17	16	1	0	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	t0004	1684	7	0	0	7	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	t0005	1684	3	0	0	3	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	t0006	1684	2	0	0	0	0	2	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	t0007	1684	2	2	0	0	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	t0008	1684	1	1	0	0	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	t0009	1684	1	1	0	0	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	t0010	1684	1	1	0	0	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	t0011	1684	1	1	0	0	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	t0012	1684	1	1	0	0	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB1_chr22_39394780_39436882	0/0	t0013	1684	1	0	0	1	0	0	copy fasta	TAB1	chr22	39394780	39436882
TAB2_chr6_149312712_149416607	0/0	t0001	2279	131	39	28	49	5	10	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0002	2279	78	3	13	54	2	6	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/1	t0003	2279	61	19	19	10	3	9	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	1/0	t0004	2282	47	13	7	22	1	3	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0005	2279	9	3	1	0	0	5	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0006	2279	5	0	0	5	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0007	2301	5	5	0	0	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0008	2279	4	4	0	0	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0009	2279	4	4	0	0	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0010	2279	3	0	0	3	0	0	copy fasta	TAB2	chr6	149312712	149416607