JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAB2_chr6_149312712_149416607	0/0	t0011	2279	3	0	1	0	1	1	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0012	2279	2	0	0	2	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0013	2279	2	2	0	0	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0014	2282	2	0	0	2	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0015	2279	1	0	0	1	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0016	2267	1	1	0	0	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0017	2279	1	1	0	0	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0018	2279	1	0	0	1	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0019	2279	1	1	0	0	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0020	2282	1	0	0	1	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0021	2282	1	0	1	0	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0022	2282	1	1	0	0	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0023	2301	1	1	0	0	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB2_chr6_149312712_149416607	0/0	t0024	2302	1	1	0	0	0	0	copy fasta	TAB2	chr6	149312712	149416607
TAB3_chrX_30822442_30894254	1/0	t0001	4509	41	0	4	32	0	4	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0002	4512	38	7	6	15	4	6	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0003	4511	33	1	13	18	1	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/1	t0004	4511	26	8	10	5	1	1	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0005	4509	21	5	5	11	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0006	4513	21	2	2	9	0	8	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0007	4512	15	2	5	7	0	1	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0008	4514	14	1	3	9	0	1	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0009	4510	11	10	0	0	1	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0010	4509	8	8	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0011	4512	7	0	0	6	0	1	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0012	4508	5	3	0	0	2	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0013	4513	5	0	0	5	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0014	4510	4	3	0	1	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0015	4513	3	1	0	2	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0016	4511	2	2	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0017	4509	2	1	0	1	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0018	4511	2	2	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0019	4510	2	0	2	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0020	4511	2	2	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0021	4512	2	0	2	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0022	4512	2	0	0	2	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0023	4510	2	0	0	2	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0024	4508	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0025	4514	1	0	0	1	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0026	4508	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0027	4507	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0028	4508	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0029	4509	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0030	4510	1	0	1	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0031	4511	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0032	4511	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0033	4512	1	0	1	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0034	4511	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0035	4511	1	0	0	1	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0036	4512	1	0	1	0	0	0	copy fasta	TAB3	chrX	30822442	30894254